Variant report

Variant	rs10991917
Chromosome Location	chr9:94153503-94153504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1105487	0.90[CEU][hapmap]
rs12236817	0.94[CEU][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2004308	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482877	chr9:93979351-94157734	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv893571	chr9:94072113-94202927	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv824980	chr9:94131502-94215911	Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv818712	chr9:94148084-94154282	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94142000-94153600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr9:94149200-94156600	Weak transcription	HepG2	liver
3	chr9:94150200-94154400	Weak transcription	Stomach Mucosa	stomach
4	chr9:94152800-94153600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr9:94153400-94153800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:94153400-94154400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:94153400-94154400	Enhancers	NHDF-Ad	bronchial
8	chr9:94153400-94154400	Enhancers	Osteobl	bone
9	chr9:94153400-94154800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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