Variant report

Variant	rs10992011
Chromosome Location	chr9:92848589-92848590
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr9:92848352-92848755	MCF-7	breast:	n/a	chr9:92848595-92848603 chr9:92848554-92848565 chr9:92848554-92848567
2	MYC	chr9:92848437-92848612	NB4	blood:	n/a	n/a
3	CEBPB	chr9:92848397-92848711	H1-hESC	embryonic stem cell:	n/a	chr9:92848595-92848603 chr9:92848554-92848565 chr9:92848554-92848567
4	CEBPB	chr9:92848491-92848653	HepG2	liver:	n/a	chr9:92848595-92848603 chr9:92848554-92848565 chr9:92848554-92848567

No.	Distal block	Cell Line	Cell type
1	chr9:92840607..92843338-chr9:92847202..92850041,2	MCF-7	breast:
2	chr9:92220340..92222193-chr9:92847340..92849839,2	MCF-7	breast:
3	chr9:92691934..92694632-chr9:92847404..92848934,2	MCF-7	breast:
4	chr9:92218598..92221430-chr9:92845578..92849913,5	MCF-7	breast:

Variant related genes	Relation type
IL6RP1	TF binding region
ENSG00000130222	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv614852	chr9:92786722-93100550	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv893562	chr9:92794721-92850878	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv893563	chr9:92816727-92967125	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92839200-92855200	Weak transcription	Pancreas	Pancrea
2	chr9:92847200-92849200	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr9:92847400-92849000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr9:92847400-92849000	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr9:92847600-92848800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr9:92847800-92848600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:92847800-92848800	Enhancers	H9 Cell Line	embryonic stem cell
8	chr9:92847800-92848800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr9:92847800-92848800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:92847800-92848800	Enhancers	Primary B cells from peripheral blood	blood
11	chr9:92847800-92848800	Enhancers	Adipose Nuclei	Adipose
12	chr9:92847800-92849000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr9:92847800-92849000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr9:92847800-92849000	Enhancers	Primary B cells from cord blood	blood
15	chr9:92847800-92849200	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr9:92847800-92849800	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr9:92848000-92848600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr9:92848000-92848600	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr9:92848000-92848600	Enhancers	Gastric	stomach
20	chr9:92848000-92848800	Enhancers	H1 Cell Line	embryonic stem cell
21	chr9:92848000-92848800	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr9:92848000-92848800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr9:92848000-92848800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr9:92848000-92848800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr9:92848000-92848800	Enhancers	Liver	Liver
26	chr9:92848000-92848800	Enhancers	Fetal Brain Male	brain
27	chr9:92848000-92848800	Enhancers	Fetal Intestine Small	intestine
28	chr9:92848000-92848800	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr9:92848000-92848800	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr9:92848000-92848800	Enhancers	Stomach Mucosa	stomach
31	chr9:92848000-92849000	Enhancers	Fetal Brain Female	brain
32	chr9:92848000-92849200	Enhancers	Placenta	Placenta
33	chr9:92848000-92849200	Enhancers	Ovary	ovary
34	chr9:92848000-92849600	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr9:92848000-92849600	Enhancers	Brain Germinal Matrix	brain
36	chr9:92848200-92848800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
37	chr9:92848400-92848600	Enhancers	Monocytes-CD14+_RO01746	blood
38	chr9:92848400-92848800	Enhancers	Fetal Muscle Trunk	muscle
39	chr9:92848400-92858000	Weak transcription	Right Atrium	heart

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