Variant report

Variant	rs10992076
Chromosome Location	chr9:94502812-94502813
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:94500963..94503336-chr9:94841950..94843552,2	K562	blood:
2	chr9:94497979..94500430-chr9:94500591..94503129,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10992077	0.90[EUR][1000 genomes]
rs10992078	0.92[EUR][1000 genomes]
rs59418928	0.94[EUR][1000 genomes]
rs7860353	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv6612	chr9:94490644-94535738	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1036176	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv540171	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94477200-94533000	Weak transcription	Fetal Kidney	kidney
2	chr9:94483600-94504000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr9:94483600-94519400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr9:94486200-94521000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr9:94486800-94517400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:94487000-94535400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr9:94489000-94508800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:94490400-94521000	Weak transcription	Right Atrium	heart
9	chr9:94493200-94517400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr9:94497400-94503000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:94497600-94503000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:94499400-94509400	Weak transcription	Fetal Intestine Large	intestine
13	chr9:94499600-94517200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr9:94499800-94503000	Weak transcription	Fetal Muscle Leg	muscle
15	chr9:94499800-94503000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr9:94499800-94503200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:94499800-94503200	Weak transcription	Colon Smooth Muscle	Colon
18	chr9:94499800-94508800	Weak transcription	K562	blood
19	chr9:94499800-94517000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr9:94499800-94520400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr9:94499800-94522800	Weak transcription	Gastric	stomach
22	chr9:94499800-94523200	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr9:94500400-94505600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr9:94501000-94515800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:94502200-94503200	Enhancers	Fetal Lung	lung
26	chr9:94502200-94503400	Enhancers	Fetal Brain Male	brain
27	chr9:94502200-94503400	Enhancers	Fetal Muscle Trunk	muscle
28	chr9:94502200-94504400	Enhancers	Rectal Smooth Muscle	rectum
29	chr9:94502400-94503200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr9:94502400-94503400	Enhancers	Ovary	ovary
31	chr9:94502600-94508400	Weak transcription	Fetal Stomach	stomach
32	chr9:94502800-94516600	Weak transcription	Fetal Intestine Small	intestine

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