Variant report

Variant	rs10992575
Chromosome Location	chr9:95772207-95772208
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95770628..95772439-chr9:95778625..95781372,2	MCF-7	breast:
2	chr9:95764397..95768278-chr9:95771729..95773311,3	K562	blood:
3	chr9:95726594..95728723-chr9:95769310..95772276,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NINJ1-2	chr9:95770397-95772719	ENSG00000248502

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10122401	0.86[AMR][1000 genomes]
rs10761188	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1054767	chr9:95738134-95875977	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1035230	chr9:95770249-95934982	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95761600-95785800	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr9:95761600-95785800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr9:95762000-95786400	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr9:95762600-95790200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:95763000-95773400	Strong transcription	Primary B cells from cord blood	blood
6	chr9:95763600-95787200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr9:95763800-95789400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:95764000-95773000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr9:95764000-95777000	Strong transcription	Dnd41	blood
10	chr9:95764400-95774000	Strong transcription	Thymus	Thymus
11	chr9:95766400-95785600	Strong transcription	Primary B cells from peripheral blood	blood
12	chr9:95766600-95772600	Weak transcription	Fetal Stomach	stomach
13	chr9:95766600-95773200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:95766600-95773800	Strong transcription	Fetal Intestine Large	intestine
15	chr9:95766600-95776200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr9:95766600-95778000	Weak transcription	Gastric	stomach
17	chr9:95766600-95780200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr9:95766600-95783400	Weak transcription	Placenta	Placenta
19	chr9:95766600-95790400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr9:95766600-95790800	Weak transcription	Right Ventricle	heart
21	chr9:95766600-95791000	Weak transcription	Colonic Mucosa	Colon
22	chr9:95766600-95791000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr9:95766600-95794000	Weak transcription	Brain Hippocampus Middle	brain
24	chr9:95766800-95772800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr9:95766800-95782400	Weak transcription	Liver	Liver
26	chr9:95766800-95786400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr9:95767000-95781800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr9:95767000-95787200	Strong transcription	Fetal Thymus	thymus
29	chr9:95767200-95776600	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr9:95767200-95781600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr9:95767400-95772600	Weak transcription	HepG2	liver
32	chr9:95767400-95775000	Weak transcription	Fetal Brain Female	brain
33	chr9:95767400-95781800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr9:95767400-95782000	Strong transcription	Primary T cells from cord blood	blood
35	chr9:95768000-95773800	Strong transcription	Primary T killer memory cells from peripheral blood	blood
36	chr9:95769000-95781600	Weak transcription	Adipose Nuclei	Adipose
37	chr9:95769600-95772600	Strong transcription	Duodenum Mucosa	Duodenum
38	chr9:95769600-95772600	Strong transcription	Fetal Intestine Small	intestine
39	chr9:95769600-95772600	Strong transcription	Pancreas	Pancrea
40	chr9:95769800-95772600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
41	chr9:95769800-95773400	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr9:95769800-95774000	Genic enhancers	Primary T cells fromperipheralblood	blood
43	chr9:95770000-95774000	Strong transcription	Brain Germinal Matrix	brain
44	chr9:95770200-95780000	Weak transcription	Left Ventricle	heart
45	chr9:95770200-95793600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr9:95771000-95777800	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr9:95771200-95774600	Weak transcription	GM12878-XiMat	blood
48	chr9:95771400-95773400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
49	chr9:95771400-95773600	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr9:95771600-95772600	Enhancers	Fetal Muscle Trunk	muscle

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