Variant report

Variant	rs10992662
Chromosome Location	chr9:95929195-95929196
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95928612..95930154-chr9:95930609..95933209,2	K562	blood:
2	chr9:95927482..95929226-chr9:95942592..95945216,3	MCF-7	breast:
3	chr9:95928654..95931051-chr9:95931709..95933466,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10761203	0.92[CEU][hapmap]
rs10821080	0.96[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10821084	1.00[YRI][hapmap]
rs10821086	0.88[CEU][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10821088	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10821095	0.96[CEU][hapmap]
rs10821098	0.96[CEU][hapmap]
rs10992669	0.80[EUR][1000 genomes]
rs10992698	0.91[CEU][hapmap]
rs1106024	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1109495	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1109496	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12336667	0.96[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12341303	0.96[CEU][hapmap]
rs12349094	0.80[EUR][1000 genomes]
rs1317698	0.92[CEU][hapmap]
rs13292831	0.93[CEU][hapmap]
rs13293217	0.81[CEU][hapmap]
rs1962428	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1970621	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2040093	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs2040094	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs2306183	0.92[CEU][hapmap]
rs4524855	0.81[EUR][1000 genomes]
rs4743911	0.88[CEU][hapmap]
rs4744185	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4744186	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4744192	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4744195	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs4744201	0.96[CEU][hapmap]
rs4744206	0.93[CEU][hapmap]
rs4744212	0.93[CEU][hapmap]
rs56039014	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62571716	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7846729	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7856802	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7857039	0.84[CEU][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7857937	0.88[CEU][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7868971	0.96[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1035230	chr9:95770249-95934982	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv893581	chr9:95872216-95930334	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv824983	chr9:95902154-95978408	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv430082	chr9:95905745-96095045	Genic enhancers Enhancers Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95907200-95944400	Weak transcription	Right Atrium	heart
2	chr9:95922400-95930600	Weak transcription	Right Ventricle	heart
3	chr9:95923000-95930600	Weak transcription	Pancreas	Pancrea
4	chr9:95924600-95930800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr9:95924800-95929400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr9:95925000-95933800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr9:95925200-95929400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr9:95925200-95930200	Weak transcription	Left Ventricle	heart
9	chr9:95925400-95930600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr9:95928400-95929200	Enhancers	HepG2	liver
11	chr9:95929000-95929400	Enhancers	Stomach Mucosa	stomach
12	chr9:95929000-95929600	Enhancers	Fetal Intestine Small	intestine
13	chr9:95929000-95929800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:95929000-95930800	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr9:95929000-95931000	Enhancers	Placenta	Placenta

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