Variant report

Variant	rs1099267
Chromosome Location	chr12:117940057-117940058
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1068928	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1071492	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1093298	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1093304	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560386	chr12:117822187-117991547	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1045538	chr12:117929400-117963331	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117935400-117941400	Enhancers	Liver	Liver
2	chr12:117936000-117940200	Enhancers	Pancreas	Pancrea
3	chr12:117938400-117941000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr12:117938600-117940800	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr12:117939000-117940200	Enhancers	Gastric	stomach
6	chr12:117939200-117940200	Enhancers	Fetal Lung	lung
7	chr12:117939200-117940200	Enhancers	Lung	lung
8	chr12:117939200-117940200	Enhancers	Right Ventricle	heart
9	chr12:117939200-117940200	Enhancers	HepG2	liver
10	chr12:117939200-117940800	Enhancers	Psoas Muscle	Psoas
11	chr12:117939600-117942800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr12:117939800-117940200	Bivalent Enhancer	Fetal Brain Male	brain
13	chr12:117939800-117940200	Enhancers	Fetal Heart	heart
14	chr12:117939800-117940200	Enhancers	Right Atrium	heart
15	chr12:117939800-117941000	Enhancers	Aorta	Aorta
16	chr12:117939800-117951200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr12:117940000-117940200	Enhancers	Brain Anterior Caudate	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links