Variant report

Variant	rs10992707
Chromosome Location	chr9:96094499-96094500
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10512221	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12003673	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap]
rs13289948	0.82[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap]
rs3858081	0.85[CHB][hapmap];0.83[CHD][hapmap];0.82[LWK][hapmap];0.83[MKK][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes]
rs3892585	1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4534181	0.85[CHB][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs4633120	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7875155	0.92[CHB][hapmap];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv430082	chr9:95905745-96095045	Genic enhancers Enhancers Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv893582	chr9:95963114-96116937	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv893584	chr9:96002983-96116937	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96068400-96100400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr9:96081000-96100600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:96083200-96100400	Weak transcription	Fetal Stomach	stomach
4	chr9:96089200-96099400	Weak transcription	Fetal Brain Female	brain
5	chr9:96091400-96096400	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr9:96092000-96096400	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr9:96093200-96094800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:96093200-96095000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
9	chr9:96093400-96095600	Strong transcription	H1 Cell Line	embryonic stem cell
10	chr9:96093400-96096200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
11	chr9:96093400-96096400	Strong transcription	H9 Cell Line	embryonic stem cell
12	chr9:96094000-96095400	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr9:96094000-96099800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr9:96094400-96095200	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr9:96094400-96095200	Enhancers	Stomach Mucosa	stomach
16	chr9:96094400-96095400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
17	chr9:96094400-96099000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links