Variant report

Variant	rs10992744
Chromosome Location	chr9:96230194-96230195
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96230020..96231557-chr9:96243930..96246449,2	MCF-7	breast:
2	chr9:96228099..96230540-chr9:96327402..96330040,2	K562	blood:
3	chr9:96224548..96228951-chr9:96229326..96235685,10	K562	blood:
4	chr9:96230132..96232279-chr9:96234940..96236781,2	K562	blood:
5	chr9:96229227..96230937-chr9:96231650..96233389,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000263875	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10821125	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992733	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10992769	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs5019496	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs944990	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96216400-96230600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr9:96216600-96231200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr9:96216600-96232800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr9:96216800-96230600	Weak transcription	Fetal Stomach	stomach
5	chr9:96216800-96231400	Enhancers	Primary T cells from cord blood	blood
6	chr9:96217200-96239800	Weak transcription	Fetal Brain Female	brain
7	chr9:96217400-96230800	Weak transcription	HSMM	muscle
8	chr9:96219200-96233400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr9:96220800-96233200	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr9:96221600-96230600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:96222200-96230600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr9:96222600-96232200	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr9:96222800-96231600	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr9:96224400-96232600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr9:96224400-96233600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr9:96224800-96232000	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr9:96224800-96232000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr9:96225000-96233600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr9:96225400-96230200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr9:96225600-96230400	Enhancers	Rectal Mucosa Donor 29	rectum
21	chr9:96225600-96231200	Enhancers	Stomach Mucosa	stomach
22	chr9:96225800-96230400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr9:96225800-96231200	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr9:96225800-96231600	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr9:96225800-96231600	Enhancers	Brain Substantia Nigra	brain
26	chr9:96225800-96231800	Enhancers	Primary B cells from peripheral blood	blood
27	chr9:96226000-96231800	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr9:96226000-96233800	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr9:96226000-96233800	Enhancers	Small Intestine	intestine
30	chr9:96226200-96231200	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr9:96226400-96231600	Enhancers	Primary T cells fromperipheralblood	blood
32	chr9:96226400-96233400	Enhancers	Colon Smooth Muscle	Colon
33	chr9:96226600-96230600	Enhancers	Fetal Thymus	thymus
34	chr9:96226600-96231200	Enhancers	Fetal Intestine Large	intestine
35	chr9:96226600-96231600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr9:96226600-96231600	Enhancers	Brain Hippocampus Middle	brain
37	chr9:96226600-96231600	Enhancers	Psoas Muscle	Psoas
38	chr9:96226600-96231600	Enhancers	Sigmoid Colon	Sigmoid Colon
39	chr9:96227000-96232000	Enhancers	Brain Anterior Caudate	brain
40	chr9:96227200-96231200	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr9:96227200-96231200	Enhancers	Adipose Nuclei	Adipose
42	chr9:96227400-96230800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr9:96227400-96231000	Enhancers	Stomach Smooth Muscle	stomach
44	chr9:96227600-96230200	Enhancers	Monocytes-CD14+_RO01746	blood
45	chr9:96227600-96230800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr9:96227600-96231800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
47	chr9:96227600-96232400	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr9:96227800-96230800	Enhancers	Gastric	stomach
49	chr9:96227800-96231600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr9:96227800-96231800	Enhancers	H1 Cell Line	embryonic stem cell

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