Variant report

Variant	rs10992935
Chromosome Location	chr9:96631650-96631651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10992927	0.94[MKK][hapmap]
rs10992933	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10992934	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10992938	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992965	0.83[EUR][1000 genomes]
rs10992970	0.81[EUR][1000 genomes]
rs11521672	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12376257	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1890377	0.81[EUR][1000 genomes]
rs62574263	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62574266	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9644971	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893588	chr9:96620419-96668352	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96628600-96632400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:96630800-96633000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:96631200-96631800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:96631200-96632200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr9:96631200-96632200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr9:96631200-96632400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:96631400-96631800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr9:96631400-96631800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr9:96631400-96632000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:96631400-96632000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr9:96631400-96632200	Enhancers	H9 Cell Line	embryonic stem cell
12	chr9:96631400-96632200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr9:96631400-96632200	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr9:96631400-96632400	Enhancers	Fetal Muscle Leg	muscle
15	chr9:96631400-96632400	Enhancers	Fetal Stomach	stomach
16	chr9:96631400-96632600	Enhancers	H1 Cell Line	embryonic stem cell
17	chr9:96631600-96632200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr9:96631600-96632800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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