Variant report

Variant	rs10992969
Chromosome Location	chr9:96660338-96660339
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10114411	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12376257	0.85[GIH][hapmap]
rs60265156	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62574306	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893588	chr9:96620419-96668352	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1053137	chr9:96644876-96683214	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1046904	chr9:96647940-96689327	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1035418	chr9:96647940-96711409	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	esv1801607	chr9:96657324-96683214	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv1042043	chr9:96657324-96689327	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96656800-96660600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:96658600-96661600	Enhancers	Primary T cells fromperipheralblood	blood
3	chr9:96658600-96661600	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr9:96659000-96661400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
5	chr9:96659000-96661600	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr9:96659000-96661600	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr9:96659200-96661200	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr9:96659200-96661400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr9:96659400-96661200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr9:96659600-96660400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr9:96659600-96661400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr9:96660000-96660600	Enhancers	Stomach Mucosa	stomach
13	chr9:96660000-96661000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr9:96660000-96661400	Enhancers	Primary T cells from cord blood	blood
15	chr9:96660200-96660400	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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