Variant report

Variant	rs10993132
Chromosome Location	chr9:97031942-97031943
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97031911..97033844-chr9:97036633..97038173,2	MCF-7	breast:
2	chr9:97020628..97022999-chr9:97030630..97033339,2	K562	blood:

Variant related genes	Relation type
ENSG00000175787	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs4557766	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55993768	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67171407	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7029268	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7029667	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7034579	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7849604	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7865288	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7865561	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases
2	esv3394266	chr9:96935210-97045514	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	195 gene(s)	inside rSNPs	diseases
3	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1046906	chr9:96999227-97239809	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97022200-97033400	Weak transcription	Fetal Stomach	stomach
2	chr9:97022200-97040800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr9:97022200-97041800	Weak transcription	Fetal Lung	lung
4	chr9:97022200-97042600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr9:97022200-97055200	Weak transcription	Aorta	Aorta
6	chr9:97022400-97036200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:97022600-97040600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr9:97022600-97055200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr9:97022800-97040800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr9:97022800-97040800	Weak transcription	Thymus	Thymus
11	chr9:97022800-97042400	Weak transcription	Brain Angular Gyrus	brain
12	chr9:97022800-97054600	Weak transcription	Pancreas	Pancrea
13	chr9:97023000-97036400	Weak transcription	Primary T cells from cord blood	blood
14	chr9:97023000-97040600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr9:97023000-97040600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr9:97023000-97040600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr9:97023000-97040600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr9:97023000-97040600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr9:97023000-97040800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:97023000-97040800	Weak transcription	Lung	lung
21	chr9:97023000-97041000	Weak transcription	Adipose Nuclei	Adipose
22	chr9:97023000-97041000	Weak transcription	Ovary	ovary
23	chr9:97023000-97041800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr9:97023000-97041800	Weak transcription	Esophagus	oesophagus
25	chr9:97023000-97050000	Weak transcription	Right Ventricle	heart
26	chr9:97023000-97055400	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr9:97023400-97042800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr9:97023600-97040800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr9:97024000-97041200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr9:97024200-97035000	Weak transcription	GM12878-XiMat	blood
31	chr9:97024400-97040400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr9:97026200-97033600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr9:97027000-97040600	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr9:97028200-97032600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr9:97029000-97039000	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr9:97029400-97033400	Weak transcription	Stomach Mucosa	stomach
37	chr9:97029600-97038800	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr9:97029600-97041800	Weak transcription	Spleen	Spleen
39	chr9:97030200-97033800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr9:97030200-97036200	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr9:97030200-97040600	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr9:97030200-97048400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr9:97030400-97040800	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr9:97030400-97042200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr9:97031000-97033600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
46	chr9:97031000-97040600	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr9:97031200-97032000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
48	chr9:97031200-97032600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
49	chr9:97031600-97032000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
50	chr9:97031600-97032000	Enhancers	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links