Variant report

Variant	rs10993282
Chromosome Location	chr9:97412037-97412038
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97399795..97401859-chr9:97411374..97414324,3	MCF-7	breast:
2	chr9:97389422..97393205-chr9:97411609..97416128,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165140	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7864831	1.00[GIH][hapmap];0.81[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv614918	chr9:97380597-97412037	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97402400-97420000	Weak transcription	Right Atrium	heart
2	chr9:97402600-97415400	Weak transcription	Spleen	Spleen
3	chr9:97405800-97418400	Weak transcription	Fetal Stomach	stomach
4	chr9:97410000-97418000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr9:97410200-97413600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr9:97410200-97413600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:97410200-97413600	Enhancers	Stomach Mucosa	stomach
8	chr9:97410200-97413800	Enhancers	HMEC	breast
9	chr9:97410400-97413600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:97410400-97413600	Enhancers	Duodenum Mucosa	Duodenum
11	chr9:97410600-97412200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr9:97410800-97412200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:97410800-97412200	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr9:97410800-97412200	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr9:97410800-97412200	Enhancers	Muscle Satellite Cultured Cells	--
16	chr9:97410800-97412200	Enhancers	HSMM	muscle
17	chr9:97410800-97412200	Enhancers	NH-A	brain
18	chr9:97410800-97412400	Enhancers	Primary hematopoietic stem cells	blood
19	chr9:97410800-97412400	Enhancers	A549	lung
20	chr9:97410800-97413600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:97411000-97412200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:97411000-97412200	Enhancers	HSMMtube	muscle
23	chr9:97411000-97412200	Enhancers	Osteobl	bone
24	chr9:97411000-97416200	Weak transcription	Lung	lung
25	chr9:97411000-97417800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr9:97411600-97412200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr9:97411600-97412200	Enhancers	Primary B cells from cord blood	blood
28	chr9:97411600-97412200	Flanking Active TSS	Hela-S3	cervix
29	chr9:97411800-97413400	Weak transcription	Gastric	stomach
30	chr9:97411800-97418000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr9:97412000-97413200	Weak transcription	Fetal Intestine Small	intestine
32	chr9:97412000-97413400	Weak transcription	Esophagus	oesophagus
33	chr9:97412000-97413600	Enhancers	NHEK	skin
34	chr9:97412000-97415600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr9:97412000-97417800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr9:97412000-97417800	Weak transcription	Fetal Muscle Leg	muscle

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