Variant report

Variant	rs10993309
Chromosome Location	chr9:97455829-97455830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10821387	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10993294	0.87[EUR][1000 genomes]
rs6479564	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97449200-97456200	Weak transcription	Fetal Intestine Large	intestine
2	chr9:97454200-97457400	Enhancers	Fetal Stomach	stomach
3	chr9:97454400-97456200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:97454600-97457400	Enhancers	Fetal Intestine Small	intestine
5	chr9:97454600-97457400	Enhancers	Pancreas	Pancrea
6	chr9:97454600-97457800	Enhancers	Brain Germinal Matrix	brain
7	chr9:97454800-97456000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:97455000-97456000	Weak transcription	Fetal Brain Male	brain
9	chr9:97455000-97456200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr9:97455000-97457200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr9:97455000-97457400	Enhancers	Fetal Brain Female	brain
12	chr9:97455000-97457600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr9:97455200-97456000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr9:97455200-97456000	Weak transcription	Fetal Muscle Leg	muscle
15	chr9:97455200-97456800	Enhancers	Fetal Lung	lung
16	chr9:97455200-97457000	Weak transcription	Gastric	stomach
17	chr9:97455200-97460200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr9:97455200-97460400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr9:97455400-97457000	Enhancers	A549	lung
20	chr9:97455400-97457400	Enhancers	HepG2	liver
21	chr9:97455600-97456000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr9:97455800-97456200	Enhancers	Stomach Smooth Muscle	stomach
23	chr9:97455800-97460200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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