Variant report

Variant	rs10993400
Chromosome Location	chr9:97686330-97686331
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:97684533..97687061-chr9:97864778..97867834,3	MCF-7	breast:
2	chr9:97674991..97691307-chr9:97751911..97773298,151	MCF-7	breast:
3	chr9:97523331..97524905-chr9:97684127..97686565,2	MCF-7	breast:
4	chr9:97663421..97665287-chr9:97685547..97688142,2	MCF-7	breast:
5	chr9:97686185..97688613-chr9:97732674..97735210,2	MCF-7	breast:
6	chr9:97685017..97689714-chr9:97737820..97743340,6	MCF-7	breast:
7	chr9:97655079..97657734-chr9:97685295..97688138,2	MCF-7	breast:
8	chr9:97684453..97687041-chr9:97818423..97820437,2	MCF-7	breast:
9	chr9:97572097..97590438-chr9:97672990..97690806,63	MCF-7	breast:
10	chr9:97671639..97694679-chr9:97760418..97786060,142	MCF-7	breast:
11	chr9:97399742..97402220-chr9:97684654..97686777,3	MCF-7	breast:
12	chr9:97488242..97490127-chr9:97683994..97686777,2	MCF-7	breast:
13	chr9:97603596..97605725-chr9:97686092..97688717,2	MCF-7	breast:
14	chr9:97444268..97446694-chr9:97684969..97686706,2	MCF-7	breast:
15	chr9:97558473..97564935-chr9:97678907..97687123,11	MCF-7	breast:
16	chr9:97530626..97534561-chr9:97683586..97686603,3	MCF-7	breast:
17	chr9:97562492..97588737-chr9:97670126..97691056,102	MCF-7	breast:
18	chr9:97649888..97652305-chr9:97683979..97686393,2	MCF-7	breast:
19	chr9:97684545..97686824-chr9:97775736..97778067,2	MCF-7	breast:
20	chr9:97685386..97687734-chr9:97748226..97751187,2	MCF-7	breast:
21	chr9:97622455..97625860-chr9:97683870..97686784,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction
ENSG00000165140	Chromatin interaction
ENSG00000230815	Chromatin interaction
ENSG00000252153	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10993358	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs10993359	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs10993367	0.87[ASN][1000 genomes]
rs10993371	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10993373	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10993379	0.85[ASN][1000 genomes]
rs10993448	1.00[JPT][hapmap]
rs12236906	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs58117015	1.00[ASN][1000 genomes]
rs7036387	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97660800-97702400	Weak transcription	Primary B cells from cord blood	blood
2	chr9:97670600-97766000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr9:97677400-97688600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:97679000-97686400	Enhancers	Placenta Amnion	Placenta Amnion
5	chr9:97679200-97687200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr9:97679400-97687000	Enhancers	Fetal Heart	heart
7	chr9:97680000-97687600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:97680200-97688000	Weak transcription	Gastric	stomach
9	chr9:97680400-97698000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr9:97680600-97686400	Enhancers	Ovary	ovary
11	chr9:97680600-97700000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr9:97681400-97686600	Enhancers	Right Atrium	heart
13	chr9:97681600-97686600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr9:97681600-97686600	Enhancers	Fetal Muscle Leg	muscle
15	chr9:97681600-97686600	Enhancers	Fetal Stomach	stomach
16	chr9:97682000-97686800	Enhancers	Brain Cingulate Gyrus	brain
17	chr9:97682000-97713800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr9:97682200-97686600	Enhancers	HMEC	breast
19	chr9:97682200-97691200	Enhancers	Placenta	Placenta
20	chr9:97682600-97686400	Enhancers	Brain Angular Gyrus	brain
21	chr9:97682600-97686800	Enhancers	Brain Germinal Matrix	brain
22	chr9:97682600-97686800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr9:97682800-97686400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr9:97682800-97686600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:97682800-97686600	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr9:97683000-97686400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr9:97683000-97686400	Enhancers	Brain Substantia Nigra	brain
28	chr9:97683200-97686600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr9:97683600-97686600	Enhancers	Brain Hippocampus Middle	brain
30	chr9:97683800-97686600	Enhancers	Esophagus	oesophagus
31	chr9:97683800-97686800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr9:97683800-97688600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr9:97684000-97686600	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr9:97684000-97686600	Enhancers	Sigmoid Colon	Sigmoid Colon
35	chr9:97684200-97686600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr9:97684200-97699600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr9:97684400-97687000	Enhancers	NHDF-Ad	bronchial
38	chr9:97684400-97688000	Weak transcription	Fetal Intestine Large	intestine
39	chr9:97684600-97686600	Enhancers	Fetal Brain Female	brain
40	chr9:97684600-97687000	Enhancers	Hela-S3	cervix
41	chr9:97684600-97687800	Weak transcription	Lung	lung
42	chr9:97684800-97686400	Enhancers	Brain Inferior Temporal Lobe	brain
43	chr9:97684800-97686800	Flanking Active TSS	HSMMtube	muscle
44	chr9:97684800-97688000	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr9:97684800-97688600	Weak transcription	Colonic Mucosa	Colon
46	chr9:97684800-97690000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr9:97684800-97711000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr9:97685000-97686600	Enhancers	NHEK	skin
49	chr9:97685000-97690400	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr9:97685200-97686400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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