Variant report

Variant	rs10993437
Chromosome Location	chr9:97746603-97746604
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97738672..97741509-chr9:97745708..97747354,2	K562	blood:
2	chr9:97744231..97746948-chr9:97752217..97755192,2	MCF-7	breast:
3	chr9:97746218..97749108-chr9:97765101..97767458,4	K562	blood:

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10512250	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993409	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10993412	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993420	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993422	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993423	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993424	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993425	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993426	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993428	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993430	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993431	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993438	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993440	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993443	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993445	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993446	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993447	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993448	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993450	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10993451	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12236203	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12236420	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12236825	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12238576	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16911884	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16911887	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3802457	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3802458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56855628	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57054200	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58325577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59246309	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59630616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7857726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7867908	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7875287	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7875888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97670600-97766000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr9:97713800-97757400	Weak transcription	Fetal Brain Female	brain
3	chr9:97715000-97758200	Weak transcription	Spleen	Spleen
4	chr9:97715200-97748200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr9:97715400-97749600	Weak transcription	Thymus	Thymus
6	chr9:97719400-97747000	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr9:97719600-97747000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr9:97728000-97754200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr9:97733400-97757600	Weak transcription	Esophagus	oesophagus
10	chr9:97734600-97757600	Weak transcription	Gastric	stomach
11	chr9:97734800-97747200	Weak transcription	Right Atrium	heart
12	chr9:97736200-97748000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:97736600-97747000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr9:97736600-97757200	Weak transcription	NH-A	brain
15	chr9:97736600-97757400	Weak transcription	NHLF	lung
16	chr9:97736600-97757600	Weak transcription	Adipose Nuclei	Adipose
17	chr9:97736600-97757600	Weak transcription	Osteobl	bone
18	chr9:97736600-97766200	Weak transcription	Right Ventricle	heart
19	chr9:97737000-97757200	Weak transcription	Fetal Heart	heart
20	chr9:97737000-97758200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:97738000-97747200	Weak transcription	Pancreas	Pancrea
22	chr9:97738000-97757600	Weak transcription	Lung	lung
23	chr9:97738200-97757600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr9:97738600-97749200	Weak transcription	Ovary	ovary
25	chr9:97738600-97753600	Weak transcription	Fetal Lung	lung
26	chr9:97738600-97757200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr9:97738600-97757400	Weak transcription	Left Ventricle	heart
28	chr9:97738600-97757600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr9:97738800-97754800	Weak transcription	NHDF-Ad	bronchial
30	chr9:97740200-97758200	Weak transcription	Placenta	Placenta
31	chr9:97741200-97758200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr9:97742400-97753000	Weak transcription	Fetal Intestine Large	intestine
33	chr9:97742600-97757400	Weak transcription	Psoas Muscle	Psoas
34	chr9:97742600-97763200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr9:97742800-97754400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr9:97743000-97747000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr9:97743000-97752600	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr9:97743000-97757000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr9:97743200-97752000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr9:97743200-97757200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr9:97743200-97759200	Weak transcription	Primary B cells from peripheral blood	blood
42	chr9:97743400-97751200	Weak transcription	Fetal Stomach	stomach
43	chr9:97743400-97757600	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr9:97743600-97758200	Weak transcription	Fetal Muscle Trunk	muscle
45	chr9:97743800-97749800	Weak transcription	Aorta	Aorta
46	chr9:97744000-97747200	Weak transcription	Fetal Thymus	thymus
47	chr9:97744000-97750600	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr9:97744000-97751200	Weak transcription	Fetal Intestine Small	intestine
49	chr9:97744000-97757600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr9:97744000-97758200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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