Variant report
| Variant | rs11000403 |
|---|---|
| Chromosome Location | chr10:53752851-53752852 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10823950 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs10823953 | 0.80[ASN][1000 genomes] |
| rs10823956 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs10823957 | 0.96[EUR][1000 genomes] |
| rs10823960 | 0.96[EUR][1000 genomes] |
| rs11000355 | 0.81[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11000373 | 0.81[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11000375 | 0.82[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11000383 | 0.82[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11000384 | 0.94[ASN][1000 genomes] |
| rs11000395 | 0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11000404 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11527417 | 0.82[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12414809 | 0.82[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs16925327 | 0.86[ASN][1000 genomes] |
| rs1903951 | 0.84[AMR][1000 genomes] |
| rs1903982 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1904043 | 0.81[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2199585 | 0.81[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4935024 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4935300 | 0.81[ASN][1000 genomes] |
| rs60791951 | 0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61656475 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs61847500 | 0.82[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs726195 | 0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1045692 | chr10:53301450-54086823 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv519743 | chr10:53721665-53773912 | Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | esv2750961 | chr10:53726294-54010594 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv532194 | chr10:53746620-54735550 | Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:53746600-53758800 | Weak transcription | Aorta | Aorta |
| 2 | chr10:53752600-53766800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
