Variant report

Variant	rs11001232
Chromosome Location	chr10:53977867-53977868
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:53951984..53954899-chr10:53976172..53978241,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11001441	1.00[AFR][1000 genomes]
rs11001714	1.00[AFR][1000 genomes]
rs12219130	1.00[AFR][1000 genomes]
rs72787311	1.00[AFR][1000 genomes]
rs72787319	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2750961	chr10:53726294-54010594	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv532194	chr10:53746620-54735550	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv895399	chr10:53900872-54219820	Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53972200-53981800	Weak transcription	Aorta	Aorta
2	chr10:53973400-53978200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr10:53973600-53982000	Weak transcription	NHDF-Ad	bronchial
4	chr10:53974600-53979000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:53975600-53978000	Enhancers	Primary B cells from peripheral blood	blood
6	chr10:53975800-53978200	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr10:53976000-53978200	Enhancers	Fetal Thymus	thymus
8	chr10:53976200-53978800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr10:53976200-53978800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr10:53976200-53979000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr10:53976600-53986000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:53976800-53978000	Enhancers	H1 Cell Line	embryonic stem cell
13	chr10:53977000-53978000	Weak transcription	Fetal Lung	lung
14	chr10:53977000-53992400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr10:53977200-53981600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:53977400-53978000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr10:53977600-53978800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr10:53977600-53979000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr10:53977600-53980000	Weak transcription	Psoas Muscle	Psoas
20	chr10:53977600-53980800	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr10:53977800-53978800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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