Variant report

Variant	rs11001540
Chromosome Location	chr10:54069473-54069474
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:54065577..54083492-chr10:54193846..54218961,120	MCF-7	breast:
2	chr10:54064374..54069621-chr10:54325572..54329506,5	MCF-7	breast:
3	chr10:54068768..54071357-chr10:54075695..54080723,4	MCF-7	breast:
4	chr10:54060116..54061619-chr10:54068153..54070919,2	MCF-7	breast:
5	chr10:54068229..54070730-chr10:54076005..54078630,2	K562	blood:
6	chr10:54069192..54071123-chr10:54231891..54233668,2	MCF-7	breast:
7	chr10:53145130..53146653-chr10:54068648..54071560,2	K562	blood:
8	chr10:54068053..54070294-chr10:54245844..54248114,2	MCF-7	breast:
9	chr10:54068750..54071230-chr10:54072937..54074524,2	K562	blood:
10	chr10:54067639..54070008-chr10:54219109..54220773,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000107984	Chromatin interaction
ENSG00000231131	Chromatin interaction
ENSG00000236671	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11001438	1.00[AMR][1000 genomes]
rs11001486	1.00[AMR][1000 genomes]
rs12251885	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv532194	chr10:53746620-54735550	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv895399	chr10:53900872-54219820	Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54068400-54073000	Weak transcription	Hela-S3	cervix
2	chr10:54068800-54069600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:54068800-54072200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:54068800-54072800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:54068800-54072800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:54068800-54072800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:54068800-54072800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:54068800-54072800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:54068800-54072800	Weak transcription	HSMM	muscle
10	chr10:54068800-54072800	Weak transcription	HSMMtube	muscle
11	chr10:54068800-54072800	Weak transcription	NHLF	lung
12	chr10:54068800-54073000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:54068800-54073000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr10:54068800-54073000	Weak transcription	Gastric	stomach
15	chr10:54068800-54073000	Weak transcription	Left Ventricle	heart
16	chr10:54068800-54073000	Weak transcription	Pancreas	Pancrea
17	chr10:54068800-54073800	Weak transcription	Lung	lung
18	chr10:54069000-54069800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr10:54069000-54070200	Enhancers	HepG2	liver
20	chr10:54069000-54070400	Enhancers	A549	lung
21	chr10:54069000-54071000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:54069000-54071000	Weak transcription	NHEK	skin
23	chr10:54069000-54072800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:54069000-54072800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:54069000-54072800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:54069000-54072800	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr10:54069000-54072800	Weak transcription	HUVEC	blood vessel
28	chr10:54069000-54072800	Weak transcription	NH-A	brain
29	chr10:54069000-54072800	Weak transcription	Osteobl	bone
30	chr10:54069000-54073200	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr10:54069200-54070000	Weak transcription	Psoas Muscle	Psoas
32	chr10:54069200-54071000	Weak transcription	HMEC	breast
33	chr10:54069200-54072800	Weak transcription	NHDF-Ad	bronchial
34	chr10:54069400-54069600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
35	chr10:54069400-54069800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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