Variant report

Variant	rs11003396
Chromosome Location	chr10:54883866-54883867
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10508986	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10762927	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11003395	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11003397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11003398	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11003399	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11003400	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11591937	0.95[ASN][1000 genomes]
rs11591938	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11596325	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11598681	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11599201	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11599226	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12569789	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12769665	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12771669	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1903969	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1903971	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1904056	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2384119	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2384124	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2384126	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35603270	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4503436	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6480996	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66765524	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67370411	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67709305	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67900879	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs68148849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7899240	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7914633	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467201	chr10:54697623-54929003	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv550906	chr10:54697623-54929003	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv470939	chr10:54700783-54917339	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv2761596	chr10:54814054-54886345	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv825385	chr10:54878972-54950501	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1797317	chr10:54879944-54884225	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
7	esv1825775	chr10:54879944-54884225	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
8	esv1825481	chr10:54879944-54884328	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
9	esv1823954	chr10:54879944-54884522	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
10	esv1795615	chr10:54882943-54884225	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
11	esv1814862	chr10:54882943-54884225	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
12	esv1826440	chr10:54882943-54884225	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
13	esv1846072	chr10:54882943-54884225	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
14	esv1849083	chr10:54882943-54884225	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
15	esv1801835	chr10:54882943-54884522	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
16	esv1850581	chr10:54882943-54884522	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
17	esv1829314	chr10:54882943-54884587	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
18	esv1846887	chr10:54882943-54888532	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv1819399	chr10:54882943-54889826	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv1823783	chr10:54882943-54890625	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv20912	chr10:54883289-54884635	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
22	nsv550923	chr10:54883442-54884082	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
23	esv1801053	chr10:54883442-54884522	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
24	esv1808226	chr10:54883442-54884522	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
25	nsv550924	chr10:54883442-54884522	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
26	esv1834292	chr10:54883442-54884587	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
27	esv1839148	chr10:54883442-54884587	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
28	nsv550925	chr10:54883442-54884587	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
29	nsv825386	chr10:54883463-54951261	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54881200-54884000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:54883000-54884000	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr10:54883600-54884200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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