Variant report

Variant	rs11005326
Chromosome Location	chr10:58117124-58117125
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11005338	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12255620	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12257459	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266849	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2087837	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4405235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280169	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752691	chr10:57738694-58541894	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831883	chr10:57947759-58139056	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv895503	chr10:58029209-58201703	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv895504	chr10:58029209-58230622	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv1035842	chr10:58084841-58150135	Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:58107200-58117600	Weak transcription	NHEK	skin
2	chr10:58107200-58117800	Weak transcription	HUVEC	blood vessel
3	chr10:58107400-58117200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:58110400-58117400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:58110600-58117600	Weak transcription	Fetal Intestine Small	intestine
6	chr10:58110600-58117800	Weak transcription	Fetal Stomach	stomach
7	chr10:58110600-58118000	Weak transcription	Thymus	Thymus
8	chr10:58110600-58119600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:58110600-58120000	Weak transcription	Pancreas	Pancrea
10	chr10:58110800-58117400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:58110800-58117600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr10:58111800-58119400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:58112000-58117800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:58112200-58117200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr10:58112200-58117400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr10:58112200-58117800	Weak transcription	HMEC	breast
17	chr10:58112200-58120000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr10:58112400-58117400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr10:58112400-58117600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr10:58112400-58117600	Weak transcription	Fetal Thymus	thymus
21	chr10:58112600-58119800	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr10:58112600-58119800	Weak transcription	NHDF-Ad	bronchial
23	chr10:58113000-58117200	Weak transcription	K562	blood
24	chr10:58113000-58119400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr10:58113000-58119600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr10:58113200-58117200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr10:58113400-58117600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr10:58113600-58119800	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr10:58114600-58117400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr10:58115200-58117400	Weak transcription	Hela-S3	cervix
31	chr10:58115600-58117400	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr10:58115600-58117400	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr10:58115600-58119600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr10:58115800-58117400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:58115800-58117400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr10:58115800-58117400	Weak transcription	NH-A	brain
37	chr10:58115800-58117600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:58115800-58119400	Weak transcription	HepG2	liver
39	chr10:58115800-58120000	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr10:58116000-58117200	Weak transcription	Dnd41	blood
41	chr10:58116000-58117600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr10:58116000-58117600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:58116000-58117600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr10:58116000-58117600	Weak transcription	Fetal Brain Female	brain
45	chr10:58116000-58117600	Weak transcription	Fetal Intestine Large	intestine
46	chr10:58116000-58117600	Weak transcription	Fetal Muscle Trunk	muscle
47	chr10:58116000-58117600	Weak transcription	Fetal Muscle Leg	muscle
48	chr10:58116000-58117600	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr10:58116000-58117600	Weak transcription	NHLF	lung
50	chr10:58116000-58118400	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links