Variant report

Variant	rs11005910
Chromosome Location	chr10:52250647-52250648
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11005293	1.00[AMR][1000 genomes]
rs11005780	0.98[AFR][1000 genomes]
rs11005832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11005972	0.85[AFR][1000 genomes]
rs12241198	0.85[AFR][1000 genomes]
rs12246361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12260887	0.85[AFR][1000 genomes]
rs12261287	0.85[AFR][1000 genomes]
rs12263463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12264511	0.86[AFR][1000 genomes]
rs12264817	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12267134	0.85[AFR][1000 genomes]
rs7068377	0.85[AFR][1000 genomes]
rs7895767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9988708	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054775	chr10:51595893-52392361	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1051087	chr10:51886486-52447295	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv916214	chr10:51886486-52458983	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv918212	chr10:51886486-52465482	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv817412	chr10:51911034-52432990	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52229800-52252000	Weak transcription	Aorta	Aorta
2	chr10:52230600-52256400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:52231200-52257800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:52234000-52261600	Weak transcription	Pancreas	Pancrea
5	chr10:52237800-52255000	Weak transcription	Liver	Liver
6	chr10:52237800-52261800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr10:52244400-52261800	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr10:52244800-52261800	Weak transcription	Primary T cells from cord blood	blood
9	chr10:52244800-52262000	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr10:52246800-52251600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr10:52247000-52271200	Weak transcription	Colon Smooth Muscle	Colon
12	chr10:52247200-52255200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr10:52248000-52261800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:52248200-52256200	Weak transcription	Left Ventricle	heart
15	chr10:52248800-52257600	Weak transcription	Ovary	ovary
16	chr10:52249200-52266800	Weak transcription	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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