Variant report

Variant	rs11006369
Chromosome Location	chr10:52390506-52390507
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52389046..52395992-chr10:52408718..52416095,10	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ASAH2B-2	chr10:52389337-52391396	ENSG00000226200.1
2	lnc-ASAH2B-2	chr10:52389337-52401211	ENSG00000226200.2

Variant related genes	Relation type
ENSG00000231345	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10826243	0.92[ASN][1000 genomes]
rs10826273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006328	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006427	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006434	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11006440	0.95[CEU][hapmap]
rs11006441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006452	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006470	1.00[CEU][hapmap];0.88[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006473	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11006474	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11006476	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11006477	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11006479	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006493	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12358192	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12358348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12358866	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12360512	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17581567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17582633	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55763387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55953936	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55969688	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56029434	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56044934	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56306926	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57002092	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60177889	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7904306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054775	chr10:51595893-52392361	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1051087	chr10:51886486-52447295	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv916214	chr10:51886486-52458983	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv918212	chr10:51886486-52465482	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv817412	chr10:51911034-52432990	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv469522	chr10:52276564-52447589	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv482564	chr10:52276564-52447589	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52385400-52392400	Weak transcription	Lung	lung
2	chr10:52385600-52392200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:52385600-52392200	Weak transcription	Left Ventricle	heart
4	chr10:52385600-52392400	Weak transcription	Gastric	stomach
5	chr10:52385600-52393000	Weak transcription	Pancreas	Pancrea
6	chr10:52385600-52393600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:52385600-52395200	Weak transcription	Esophagus	oesophagus
8	chr10:52385800-52391000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:52385800-52391600	Weak transcription	Brain Angular Gyrus	brain
10	chr10:52385800-52392800	Weak transcription	Aorta	Aorta
11	chr10:52385800-52394800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:52385800-52395000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr10:52385800-52396000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr10:52385800-52396800	Weak transcription	Fetal Brain Male	brain
15	chr10:52385800-52397000	Weak transcription	Psoas Muscle	Psoas
16	chr10:52385800-52397000	Weak transcription	Small Intestine	intestine
17	chr10:52386000-52390600	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr10:52386000-52391600	Weak transcription	Fetal Kidney	kidney
19	chr10:52386000-52391600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr10:52386000-52392200	Weak transcription	Fetal Stomach	stomach
21	chr10:52386000-52392200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr10:52386000-52392400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:52386000-52392400	Weak transcription	Fetal Intestine Small	intestine
24	chr10:52386000-52393400	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr10:52386000-52394600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr10:52386000-52394800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:52386000-52394800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr10:52386000-52394800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr10:52386000-52394800	Weak transcription	HSMM	muscle
30	chr10:52386000-52395000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr10:52386000-52395200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr10:52386000-52395800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr10:52386000-52396000	Weak transcription	Primary hematopoietic stem cells	blood
34	chr10:52386000-52397000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr10:52386000-52400400	Weak transcription	Fetal Lung	lung
36	chr10:52386200-52390600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr10:52386200-52396200	Weak transcription	Primary B cells from cord blood	blood
38	chr10:52386200-52396200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr10:52386400-52393600	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr10:52386800-52390800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr10:52387000-52390800	Strong transcription	Liver	Liver
42	chr10:52387200-52390600	Enhancers	H1 Cell Line	embryonic stem cell
43	chr10:52387200-52390800	Strong transcription	Primary B cells from peripheral blood	blood
44	chr10:52388200-52394600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr10:52388400-52394600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr10:52389400-52391000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr10:52389600-52390600	Strong transcription	Fetal Intestine Large	intestine
48	chr10:52389600-52396000	Weak transcription	GM12878-XiMat	blood
49	chr10:52389800-52391400	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr10:52389800-52394400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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