Variant report

Variant	rs11006729
Chromosome Location	chr10:28109644-28109645
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12573177	1.00[AMR][1000 genomes]
rs57246433	1.00[AMR][1000 genomes]
rs58428411	1.00[AMR][1000 genomes]
rs60016736	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831813	chr10:28017606-28200651	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv971859	chr10:28070066-28271252	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28105600-28127600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:28108800-28110000	Enhancers	Aorta	Aorta
3	chr10:28108800-28110000	Enhancers	Pancreas	Pancrea
4	chr10:28108800-28110000	Enhancers	Rectal Smooth Muscle	rectum
5	chr10:28109000-28110000	Enhancers	Psoas Muscle	Psoas
6	chr10:28109400-28109800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:28109400-28109800	Weak transcription	Left Ventricle	heart
8	chr10:28109400-28110000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr10:28109400-28110000	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr10:28109400-28111000	Weak transcription	Colon Smooth Muscle	Colon
11	chr10:28109400-28111200	Weak transcription	Fetal Stomach	stomach
12	chr10:28109400-28111200	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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