Variant report

Variant	rs11006891
Chromosome Location	chr10:28421606-28421607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11006885	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11006887	0.92[AFR][1000 genomes]
rs12251727	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12573372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1042524	chr10:28290149-28506812	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831816	chr10:28304698-28493635	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv831817	chr10:28369836-28539930	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv1848511	chr10:28373644-28464753	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv894989	chr10:28384098-28449974	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv949151	chr10:28386125-28455221	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv1845096	chr10:28405411-28423204	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
11	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
12	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
13	nsv520842	chr10:28419760-28422708	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv947794	chr10:28420102-28426424	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28376000-28438400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr10:28378600-28425600	Weak transcription	Colon Smooth Muscle	Colon
3	chr10:28396400-28422400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr10:28403600-28443200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:28409600-28427800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:28413000-28424200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr10:28413200-28426200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr10:28413200-28440600	Weak transcription	Left Ventricle	heart
9	chr10:28413800-28425400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr10:28416000-28422000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr10:28416200-28425200	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr10:28416800-28423800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:28417000-28449200	Weak transcription	Pancreas	Pancrea
14	chr10:28417200-28422000	Weak transcription	Fetal Intestine Small	intestine
15	chr10:28417200-28422600	Weak transcription	Fetal Stomach	stomach
16	chr10:28417600-28458000	Weak transcription	Aorta	Aorta
17	chr10:28418000-28425600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr10:28419400-28422000	Weak transcription	Primary T cells from cord blood	blood
19	chr10:28419600-28421800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:28419600-28422200	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr10:28419600-28422200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr10:28419600-28422400	Weak transcription	Fetal Intestine Large	intestine
23	chr10:28419600-28424000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr10:28419600-28425800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr10:28419800-28426200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr10:28419800-28426600	Weak transcription	HSMMtube	muscle
27	chr10:28420600-28422200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr10:28420600-28425200	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr10:28420600-28425200	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr10:28421000-28422600	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr10:28421000-28425800	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr10:28421200-28428200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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