Variant report

Variant	rs11006955
Chromosome Location	chr10:28542928-28542929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:28532869..28536330-chr10:28540569..28543040,3	MCF-7	breast:
2	chr10:28538163..28546243-chr10:28589319..28594336,15	MCF-7	breast:
3	chr10:28542308..28543962-chr10:28578219..28580065,2	MCF-7	breast:
4	chr10:28542577..28545073-chr10:28590628..28593089,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150054	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11006996	0.82[AMR][1000 genomes]
rs11007002	0.86[AMR][1000 genomes]
rs12357385	0.90[AMR][1000 genomes]
rs61845938	0.90[AMR][1000 genomes]
rs61845939	0.86[AMR][1000 genomes]
rs61845943	0.86[AMR][1000 genomes]
rs7090006	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28519000-28552000	Weak transcription	Fetal Stomach	stomach
2	chr10:28521800-28544400	Weak transcription	Pancreas	Pancrea
3	chr10:28535800-28551600	Weak transcription	Fetal Intestine Small	intestine
4	chr10:28537400-28552600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:28537600-28543000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:28537600-28549400	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr10:28537600-28552600	Weak transcription	Primary T cells from cord blood	blood
8	chr10:28537800-28543000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:28537800-28543000	Weak transcription	Primary B cells from cord blood	blood
10	chr10:28537800-28543200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr10:28537800-28543600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr10:28537800-28550200	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr10:28538000-28543000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr10:28538000-28543200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:28538000-28543800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:28538800-28544400	Weak transcription	Left Ventricle	heart
17	chr10:28539800-28543200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr10:28540000-28544200	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr10:28540200-28543200	Weak transcription	HSMM	muscle
20	chr10:28540400-28543200	Weak transcription	Osteobl	bone
21	chr10:28540400-28544200	Enhancers	Rectal Smooth Muscle	rectum
22	chr10:28541200-28543400	Enhancers	Colon Smooth Muscle	Colon
23	chr10:28541200-28543800	Enhancers	Stomach Smooth Muscle	stomach
24	chr10:28541400-28544000	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr10:28541600-28543600	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr10:28541800-28543600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr10:28542000-28543000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr10:28542000-28549400	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr10:28542200-28543000	Enhancers	NHEK	skin
30	chr10:28542200-28543400	Enhancers	HMEC	breast
31	chr10:28542200-28543400	Weak transcription	HSMMtube	muscle
32	chr10:28542400-28543400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:28542400-28543400	Weak transcription	Fetal Heart	heart
34	chr10:28542400-28543600	Enhancers	Hela-S3	cervix
35	chr10:28542400-28552400	Weak transcription	Psoas Muscle	Psoas
36	chr10:28542800-28544000	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr10:28542800-28550200	Weak transcription	Aorta	Aorta

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