Variant report

Variant	rs11007023
Chromosome Location	chr10:28614928-28614929
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11007022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12253991	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2368309	0.81[ASN][1000 genomes]
rs2368310	0.81[ASN][1000 genomes]
rs6481516	0.81[ASN][1000 genomes]
rs7074005	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7094079	0.81[ASN][1000 genomes]
rs7908075	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs879776	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1044938	chr10:28601993-28659440	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28593200-28615400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:28593400-28615200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr10:28596800-28618800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr10:28601600-28615400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:28602000-28615200	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr10:28604000-28615600	Weak transcription	Primary T cells from cord blood	blood
7	chr10:28607000-28615600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr10:28608000-28615000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr10:28609200-28615600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr10:28609200-28615800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr10:28610000-28615200	Weak transcription	Right Atrium	heart
12	chr10:28611800-28615600	Weak transcription	Pancreas	Pancrea
13	chr10:28614000-28615200	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr10:28614000-28615400	Enhancers	Colon Smooth Muscle	Colon
15	chr10:28614000-28619000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr10:28614400-28615000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:28614400-28615200	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr10:28614400-28615200	Weak transcription	Esophagus	oesophagus
19	chr10:28614400-28615200	Enhancers	Rectal Smooth Muscle	rectum
20	chr10:28614400-28615800	Enhancers	Fetal Muscle Leg	muscle
21	chr10:28614600-28615000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr10:28614600-28615000	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr10:28614600-28615200	Enhancers	Fetal Heart	heart
24	chr10:28614600-28617800	Enhancers	Fetal Stomach	stomach
25	chr10:28614800-28615200	Enhancers	Stomach Smooth Muscle	stomach
26	chr10:28614800-28615400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr10:28614800-28617000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr10:28614800-28620600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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