Variant report

Variant	rs11011380
Chromosome Location	chr10:38130400-38130401
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:38123769..38125348-chr10:38128323..38130587,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12246655	1.00[YRI][hapmap]
rs12251235	1.00[YRI][hapmap]
rs12258811	1.00[YRI][hapmap]
rs12260004	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38115600-38138200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr10:38115800-38132200	ZNF genes & repeats	Fetal Brain Female	brain
3	chr10:38116200-38137800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr10:38116600-38135800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
5	chr10:38117400-38131600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
6	chr10:38121200-38131200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:38122200-38134400	Weak transcription	Hela-S3	cervix
8	chr10:38123000-38144400	Weak transcription	NHEK	skin
9	chr10:38124000-38144400	Weak transcription	NH-A	brain
10	chr10:38125200-38144400	Weak transcription	Psoas Muscle	Psoas
11	chr10:38125600-38142800	Weak transcription	NHDF-Ad	bronchial
12	chr10:38125800-38132200	Strong transcription	Dnd41	blood
13	chr10:38125800-38143200	Weak transcription	HepG2	liver
14	chr10:38125800-38144400	Weak transcription	HMEC	breast
15	chr10:38126600-38145600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr10:38126800-38134600	Weak transcription	Stomach Mucosa	stomach
17	chr10:38126800-38144800	Weak transcription	Thymus	Thymus
18	chr10:38127000-38131200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:38127000-38131200	Weak transcription	Fetal Stomach	stomach
20	chr10:38127000-38131400	Weak transcription	Aorta	Aorta
21	chr10:38127000-38131600	Weak transcription	Right Ventricle	heart
22	chr10:38127000-38131600	Weak transcription	Small Intestine	intestine
23	chr10:38127000-38132000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr10:38127000-38134000	Weak transcription	Spleen	Spleen
25	chr10:38127000-38134800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:38127000-38134800	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr10:38127000-38135000	Weak transcription	Lung	lung
28	chr10:38127000-38135400	Weak transcription	Esophagus	oesophagus
29	chr10:38127000-38142800	Weak transcription	Colon Smooth Muscle	Colon
30	chr10:38127000-38143600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr10:38127000-38143600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr10:38127000-38143800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr10:38127000-38144200	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr10:38127000-38144400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr10:38127000-38144400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr10:38127000-38144400	Weak transcription	HSMMtube	muscle
37	chr10:38127000-38144600	Weak transcription	K562	blood
38	chr10:38127000-38145200	Weak transcription	Gastric	stomach
39	chr10:38127000-38145600	Weak transcription	Colonic Mucosa	Colon
40	chr10:38127200-38135400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr10:38127200-38143000	Weak transcription	Brain Hippocampus Middle	brain
42	chr10:38127200-38144400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr10:38127200-38144400	Weak transcription	Osteobl	bone
44	chr10:38127200-38145800	Weak transcription	Placenta	Placenta
45	chr10:38127400-38131400	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr10:38127400-38131800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr10:38127400-38134600	Weak transcription	Fetal Heart	heart
48	chr10:38127400-38142800	Weak transcription	Brain Cingulate Gyrus	brain
49	chr10:38127400-38143000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr10:38127400-38143600	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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