Variant report

Variant	rs11011637
Chromosome Location	chr10:20117944-20117945
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10827888	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10827889	0.92[EUR][1000 genomes]
rs11011532	0.89[EUR][1000 genomes]
rs11011559	0.97[EUR][1000 genomes]
rs11011560	0.97[EUR][1000 genomes]
rs11011576	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs11011581	0.92[TSI][hapmap];0.86[EUR][1000 genomes]
rs11011636	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12263862	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12779736	0.97[EUR][1000 genomes]
rs67654461	0.86[EUR][1000 genomes]
rs7073980	0.95[EUR][1000 genomes]
rs7917832	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049295	chr10:19740296-20509036	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv34306	chr10:19777069-20117944	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1044794	chr10:20010269-20391329	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv540510	chr10:20010269-20391329	Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1038966	chr10:20010469-20391190	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv540511	chr10:20010469-20391190	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1037055	chr10:20010469-20651965	Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv540512	chr10:20010469-20651965	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:20107600-20121600	Weak transcription	Left Ventricle	heart
2	chr10:20110400-20151400	Weak transcription	Fetal Intestine Small	intestine
3	chr10:20112200-20119800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:20113000-20119600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:20113000-20119800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr10:20113200-20118800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr10:20113200-20119400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr10:20114000-20125200	Weak transcription	Fetal Kidney	kidney
9	chr10:20115200-20118400	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr10:20115200-20154000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr10:20115800-20118000	Enhancers	Brain Angular Gyrus	brain
12	chr10:20115800-20118400	Enhancers	Brain Substantia Nigra	brain
13	chr10:20115800-20118400	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr10:20115800-20118600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr10:20115800-20118600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr10:20116000-20118200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:20116200-20118200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:20116200-20121600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr10:20116400-20118600	Enhancers	Fetal Muscle Leg	muscle
20	chr10:20116600-20119400	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr10:20116800-20118200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:20116800-20118400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr10:20116800-20118400	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr10:20116800-20118600	Enhancers	Brain Anterior Caudate	brain
25	chr10:20117000-20118000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:20117000-20118200	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr10:20117000-20118200	Enhancers	Brain Cingulate Gyrus	brain
28	chr10:20117000-20118400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr10:20117000-20118400	Enhancers	H9 Cell Line	embryonic stem cell
30	chr10:20117000-20118400	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr10:20117000-20118400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
32	chr10:20117000-20118400	Enhancers	Right Atrium	heart
33	chr10:20117000-20118600	Enhancers	H1 Cell Line	embryonic stem cell
34	chr10:20117000-20118600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr10:20117000-20118600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr10:20117000-20118600	Enhancers	Ovary	ovary
37	chr10:20117000-20118800	Enhancers	Aorta	Aorta
38	chr10:20117000-20119000	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr10:20117200-20118000	Enhancers	Fetal Stomach	stomach
40	chr10:20117200-20118200	Enhancers	Colon Smooth Muscle	Colon
41	chr10:20117200-20118400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr10:20117200-20118600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr10:20117400-20118000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr10:20117400-20118400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
45	chr10:20117400-20118600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr10:20117600-20118000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr10:20117600-20118000	Enhancers	Right Ventricle	heart
48	chr10:20117600-20118200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr10:20117600-20118200	Enhancers	HSMMtube	muscle
50	chr10:20117600-20118400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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