Variant report

Variant	rs11012626
Chromosome Location	chr10:21554006-21554007
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11595146	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7083609	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv971871	chr10:21460392-21579987	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21547400-21554600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:21550200-21559800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:21550200-21560200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr10:21550400-21554200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:21550400-21556400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr10:21550400-21559800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr10:21550400-21560200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr10:21551200-21564000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr10:21551800-21555200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:21552400-21554200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:21552400-21554200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:21552800-21554800	Enhancers	NHEK	skin
13	chr10:21552800-21555200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:21552800-21555200	Enhancers	HMEC	breast
15	chr10:21553400-21554200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr10:21553400-21554400	Weak transcription	K562	blood
17	chr10:21553400-21567000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr10:21554000-21555000	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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