Variant report

Variant	rs11012632
Chromosome Location	chr10:21562016-21562017
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:21378186..21380130-chr10:21561196..21563955,2	K562	blood:
2	chr10:21462340..21465477-chr10:21561672..21565711,4	MCF-7	breast:
3	chr10:21560918..21562643-chr10:21566153..21567946,2	MCF-7	breast:
4	chr10:21559791..21562059-chr10:21814751..21816804,2	MCF-7	breast:
5	chr10:21463085..21464624-chr10:21562016..21563846,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231920	Chromatin interaction
ENSG00000078114	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10764311	1.00[ASN][1000 genomes]
rs11012639	1.00[ASN][1000 genomes]
rs11595146	1.00[CEU][hapmap]
rs12356423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv971871	chr10:21460392-21579987	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2761579	chr10:21554557-21612760	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21551200-21564000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:21553400-21567000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:21558200-21562400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:21558200-21567600	Weak transcription	Ovary	ovary
5	chr10:21560200-21567600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr10:21560400-21563000	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr10:21560400-21567600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr10:21560400-21567800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:21560400-21567800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr10:21560800-21567200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:21561200-21562800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr10:21561400-21562600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:21561400-21563000	Enhancers	A549	lung
14	chr10:21561400-21563200	Enhancers	K562	blood
15	chr10:21561600-21562200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:21561600-21562200	Enhancers	HUVEC	blood vessel
17	chr10:21561600-21562600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:21561600-21564000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:21561800-21562400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr10:21561800-21562600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:21561800-21574200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr10:21562000-21562400	Enhancers	Hela-S3	cervix

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