Variant report

Variant	rs11012724
Chromosome Location	chr10:21784722-21784723
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:21783662..21785524-chr10:22208939..22211196,2	MCF-7	breast:
2	chr10:21784668..21785216-chr10:21964281..21964790,2	K562	blood:
3	chr10:21784522..21785281-chr10:22242169..22242778,2	MCF-7	breast:
4	chr10:21783475..21788073-chr10:21802793..21808915,11	MCF-7	breast:
5	chr10:21462007..21464472-chr10:21781862..21786298,5	MCF-7	breast:
6	chr10:21782892..21787980-chr10:21813728..21817191,12	MCF-7	breast:
7	chr10:21784684..21785249-chr10:22019910..22020722,2	K562	blood:
8	chr10:21784438..21786291-chr10:22610167..22612882,2	MCF-7	breast:
9	chr10:21783009..21787738-chr10:21813105..21820576,17	MCF-7	breast:
10	chr10:21784405..21786921-chr10:21820578..21824484,6	MCF-7	breast:
11	chr10:21784105..21788419-chr10:21820020..21825934,15	K562	blood:
12	chr10:21566105..21568881-chr10:21783134..21785349,2	MCF-7	breast:
13	chr10:21784438..21784982-chr10:21929257..21929911,2	K562	blood:
14	chr10:21784381..21785021-chr10:21806127..21806753,2	MCF-7	breast:
15	chr10:21783888..21789239-chr10:21811898..21819387,16	K562	blood:
16	chr10:21569788..21572402-chr10:21783727..21785486,2	MCF-7	breast:
17	chr10:21147261..21147843-chr10:21784243..21785227,2	K562	blood:
18	chr10:21783306..21788486-chr10:21805319..21811721,9	K562	blood:

No data

Variant related genes	Relation type
ENSG00000078114	Chromatin interaction
ENSG00000180592	Chromatin interaction
ENSG00000078403	Chromatin interaction
ENSG00000168283	Chromatin interaction
ENSG00000231920	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11012757	1.00[YRI][hapmap]
rs11498365	1.00[YRI][hapmap]
rs12261982	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825284	chr10:21739527-21847437	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv825285	chr10:21742026-21874334	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv825286	chr10:21757784-21838890	Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
4	nsv825288	chr10:21759085-21831354	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
5	nsv825289	chr10:21762506-21845875	Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
6	nsv527055	chr10:21764019-21822856	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
7	nsv825290	chr10:21777857-21830878	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
8	nsv894936	chr10:21781589-21827796	Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
9	nsv550200	chr10:21782842-21824727	Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
10	nsv894937	chr10:21782842-21827796	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
11	nsv517469	chr10:21783634-21822856	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21782600-21786400	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr10:21783000-21784800	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
3	chr10:21783000-21784800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
4	chr10:21783000-21784800	Flanking Active TSS	Liver	Liver
5	chr10:21783000-21784800	Flanking Bivalent TSS/Enh	Dnd41	blood
6	chr10:21783000-21784800	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
7	chr10:21783000-21786600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr10:21783000-21786600	Active TSS	H9 Cell Line	embryonic stem cell
9	chr10:21783000-21786600	Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr10:21783000-21786600	Active TSS	Brain Cingulate Gyrus	brain
11	chr10:21783000-21786600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:21783000-21786600	Active TSS	Brain Substantia Nigra	brain
13	chr10:21783000-21786600	Active TSS	Colon Smooth Muscle	Colon
14	chr10:21783000-21786600	Active TSS	Ovary	ovary
15	chr10:21783000-21786800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:21783000-21786800	Active TSS	Brain Angular Gyrus	brain
17	chr10:21783200-21784800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr10:21783200-21784800	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
19	chr10:21783200-21784800	Active TSS	Fetal Heart	heart
20	chr10:21783200-21784800	Flanking Active TSS	HUVEC	blood vessel
21	chr10:21783200-21785800	Active TSS	Pancreas	Pancrea
22	chr10:21783200-21786200	Active TSS	Psoas Muscle	Psoas
23	chr10:21783200-21786600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr10:21783200-21786600	Active TSS	Breast Myoepithelial Primary Cells	Breast
25	chr10:21783200-21786600	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
26	chr10:21783200-21786600	Active TSS	Aorta	Aorta
27	chr10:21783200-21786600	Active TSS	Fetal Kidney	kidney
28	chr10:21783200-21786600	Active TSS	Left Ventricle	heart
29	chr10:21783200-21786600	Active TSS	Right Ventricle	heart
30	chr10:21783200-21786600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
31	chr10:21783200-21786800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr10:21783200-21786800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr10:21783200-21786800	Active TSS	Fetal Lung	lung
34	chr10:21783200-21786800	Active TSS	NHDF-Ad	bronchial
35	chr10:21783200-21787000	Active TSS	Pancreatic Islets	Pancreatic Islet
36	chr10:21783400-21784800	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
37	chr10:21783400-21785400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr10:21783400-21785800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr10:21783400-21785800	Active TSS	Fetal Muscle Leg	muscle
40	chr10:21783400-21785800	Active TSS	Placenta	Placenta
41	chr10:21783400-21785800	Active TSS	Lung	lung
42	chr10:21783400-21786200	Active TSS	Esophagus	oesophagus
43	chr10:21783400-21786400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr10:21783400-21786400	Active TSS	HUES6 Cell Line	embryonic stem cell
45	chr10:21783400-21786400	Active TSS	Brain Hippocampus Middle	brain
46	chr10:21783400-21786400	Active TSS	HSMM	muscle
47	chr10:21783400-21786600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr10:21783400-21786600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr10:21783400-21786600	Active TSS	HUES64 Cell Line	embryonic stem cell
50	chr10:21783400-21786600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell

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