Variant report

Variant	rs11012784
Chromosome Location	chr10:22052769-22052770
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22052432..22054490-chr10:22062596..22064322,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12244996	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv894947	chr10:21869609-22117913	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv550203	chr10:21916468-22062729	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv540513	chr10:22031022-22065456	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22028200-22056600	Weak transcription	Hela-S3	cervix
2	chr10:22029400-22053000	Weak transcription	Colonic Mucosa	Colon
3	chr10:22034400-22054200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr10:22034400-22057600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr10:22034400-22074000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:22036000-22053000	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr10:22036000-22053200	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr10:22036200-22052800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr10:22036200-22066600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr10:22036600-22052800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr10:22041200-22055400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:22043800-22053800	Weak transcription	Fetal Thymus	thymus
13	chr10:22047200-22074000	Weak transcription	K562	blood
14	chr10:22047600-22054600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr10:22047600-22055800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr10:22048000-22053400	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr10:22048000-22061600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:22048000-22109000	Weak transcription	Ovary	ovary
19	chr10:22048200-22052800	Weak transcription	Fetal Lung	lung
20	chr10:22048200-22069200	Weak transcription	Right Ventricle	heart
21	chr10:22048200-22074000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr10:22048400-22070400	Weak transcription	Pancreas	Pancrea
23	chr10:22048400-22087400	Weak transcription	Aorta	Aorta
24	chr10:22048400-22094800	Weak transcription	Small Intestine	intestine
25	chr10:22048400-22099200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr10:22048600-22054600	Weak transcription	Adipose Nuclei	Adipose
27	chr10:22048600-22056400	Weak transcription	Brain Hippocampus Middle	brain
28	chr10:22048600-22056400	Weak transcription	Fetal Intestine Large	intestine
29	chr10:22048600-22058200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr10:22048600-22058600	Weak transcription	GM12878-XiMat	blood
31	chr10:22048600-22060400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr10:22048600-22061800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr10:22048600-22067600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr10:22048600-22067800	Weak transcription	Lung	lung
35	chr10:22048600-22074000	Weak transcription	Left Ventricle	heart
36	chr10:22048600-22074000	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr10:22048600-22076400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr10:22048600-22076600	Weak transcription	Gastric	stomach
39	chr10:22048800-22055400	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr10:22048800-22056200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:22048800-22057800	Weak transcription	Stomach Smooth Muscle	stomach
42	chr10:22048800-22061800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr10:22048800-22079600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr10:22048800-22114000	Weak transcription	Duodenum Mucosa	Duodenum
45	chr10:22049000-22053000	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr10:22049000-22061800	Weak transcription	Primary hematopoietic stem cells	blood
47	chr10:22049000-22061800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr10:22049000-22086400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr10:22049400-22053600	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr10:22049400-22074000	Weak transcription	Liver	Liver

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