Variant report

Variant	rs11013309
Chromosome Location	chr10:23465740-23465741
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11013311	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11013312	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11013313	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11013314	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11013315	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12240604	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12244149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12245976	1.00[AMR][1000 genomes]
rs12246196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12248042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251091	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12252677	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12253547	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12255738	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12259381	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12266688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12267589	0.83[AFR][1000 genomes]
rs74121763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74121787	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825301	chr10:23440604-23505846	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv831810	chr10:23445647-23605270	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv825302	chr10:23457022-23497329	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23461600-23466200	Active TSS	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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