Variant report

Variant	rs11014511
Chromosome Location	chr10:18787195-18787196
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7905730	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11014511	CACNB2	cis	parietal	SCAN
rs11014511	FAM188A	cis	cerebellum	SCAN

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18732400-18801600	Weak transcription	Pancreas	Pancrea
2	chr10:18775600-18800600	Weak transcription	Fetal Intestine Large	intestine
3	chr10:18776200-18809400	Weak transcription	Right Ventricle	heart
4	chr10:18776200-18812200	Weak transcription	Right Atrium	heart
5	chr10:18778600-18818200	Weak transcription	Fetal Intestine Small	intestine
6	chr10:18779600-18803200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:18780400-18787600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr10:18780600-18788200	Weak transcription	Left Ventricle	heart
9	chr10:18781000-18803200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr10:18785400-18808400	Weak transcription	Colon Smooth Muscle	Colon
11	chr10:18785600-18789400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:18786000-18789600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr10:18786000-18794600	Weak transcription	Aorta	Aorta
14	chr10:18786600-18787400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr10:18786600-18790000	Enhancers	Fetal Heart	heart
16	chr10:18786800-18787400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:18786800-18787600	Enhancers	Brain Hippocampus Middle	brain
18	chr10:18786800-18787800	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr10:18786800-18788000	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr10:18786800-18802000	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr10:18787000-18787200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr10:18787000-18787400	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr10:18787000-18787400	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr10:18787000-18787600	Enhancers	Brain Cingulate Gyrus	brain
25	chr10:18787000-18787600	Enhancers	Ovary	ovary
26	chr10:18787000-18788000	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr10:18787000-18788000	Enhancers	Brain Substantia Nigra	brain
28	chr10:18787000-18788200	Enhancers	Fetal Lung	lung

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