Variant report

Variant	rs11014651
Chromosome Location	chr10:18815031-18815032
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10466095	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs10508564	0.86[YRI][hapmap]
rs11014769	0.82[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11014986	0.83[AMR][1000 genomes]
rs11014994	0.83[AMR][1000 genomes]
rs11015036	0.85[YRI][hapmap];0.83[AMR][1000 genomes]
rs11015184	0.86[YRI][hapmap];0.83[AMR][1000 genomes]
rs12247578	0.82[YRI][hapmap]
rs12247869	0.86[YRI][hapmap]
rs12249604	0.85[YRI][hapmap]
rs12250601	0.83[AMR][1000 genomes]
rs12255014	1.00[AMR][1000 genomes]
rs12258119	0.85[YRI][hapmap]
rs12258306	1.00[AMR][1000 genomes]
rs12267405	1.00[AMR][1000 genomes]
rs12269605	1.00[AMR][1000 genomes]
rs16917423	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16917589	0.85[YRI][hapmap]
rs16917615	0.86[YRI][hapmap]
rs16917628	0.85[YRI][hapmap]
rs17363677	0.86[YRI][hapmap]
rs4614337	0.85[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1042073	chr10:18806900-18838303	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18778600-18818200	Weak transcription	Fetal Intestine Small	intestine
2	chr10:18792400-18825400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:18794000-18818400	Weak transcription	Fetal Brain Male	brain
4	chr10:18799800-18825200	Weak transcription	Colonic Mucosa	Colon
5	chr10:18800200-18826800	Weak transcription	Brain Substantia Nigra	brain
6	chr10:18800400-18827000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:18800800-18818800	Weak transcription	Brain Germinal Matrix	brain
8	chr10:18800800-18819400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr10:18801000-18818800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr10:18802000-18825000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr10:18802600-18828000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr10:18802600-18828200	Weak transcription	Lung	lung
13	chr10:18807200-18826800	Weak transcription	Brain Hippocampus Middle	brain
14	chr10:18807400-18828000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:18807600-18816400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr10:18807600-18818800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr10:18808000-18828000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:18808400-18827000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr10:18808800-18825400	Weak transcription	Fetal Brain Female	brain
20	chr10:18809000-18824000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr10:18809000-18827000	Weak transcription	Small Intestine	intestine
22	chr10:18809200-18819000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr10:18809800-18817800	Weak transcription	Fetal Stomach	stomach
24	chr10:18809800-18817800	Weak transcription	Pancreas	Pancrea
25	chr10:18810400-18815400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr10:18810400-18816400	Weak transcription	Liver	Liver
27	chr10:18810400-18818400	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr10:18810400-18828000	Weak transcription	Brain Angular Gyrus	brain
29	chr10:18810600-18827000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr10:18810600-18828200	Weak transcription	Aorta	Aorta
31	chr10:18810800-18825400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr10:18810800-18828000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr10:18811000-18816400	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr10:18811000-18816400	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr10:18811000-18816600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr10:18811000-18816600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr10:18811000-18817800	Weak transcription	Ovary	ovary
38	chr10:18811000-18817800	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr10:18811000-18818200	Weak transcription	Left Ventricle	heart
40	chr10:18811000-18825400	Weak transcription	Right Ventricle	heart
41	chr10:18811000-18826800	Weak transcription	Brain Cingulate Gyrus	brain
42	chr10:18811200-18816400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr10:18811200-18818800	Weak transcription	Fetal Lung	lung
44	chr10:18811200-18819000	Weak transcription	Fetal Intestine Large	intestine
45	chr10:18812400-18816600	Weak transcription	Fetal Kidney	kidney
46	chr10:18812400-18825200	Weak transcription	Brain Anterior Caudate	brain
47	chr10:18812400-18827000	Weak transcription	Rectal Smooth Muscle	rectum
48	chr10:18812600-18816000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr10:18812600-18816400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr10:18812600-18823000	Weak transcription	Colon Smooth Muscle	Colon

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