Variant report

Variant	rs11015146
Chromosome Location	chr10:26804638-26804639
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1013471	0.83[CHB][hapmap];0.89[TSI][hapmap]
rs1318662	0.88[CHB][hapmap];0.87[JPT][hapmap];0.83[LWK][hapmap];0.89[ASN][1000 genomes]
rs72805215	0.87[ASN][1000 genomes]
rs932874	0.88[CHB][hapmap];0.84[CHD][hapmap];0.87[JPT][hapmap];0.85[LWK][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26776600-26820200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:26780200-26834000	Strong transcription	Dnd41	blood
3	chr10:26780400-26805800	Strong transcription	Primary B cells from peripheral blood	blood
4	chr10:26780400-26837600	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr10:26780800-26827000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr10:26781000-26814000	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr10:26781000-26837400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr10:26781200-26808000	Strong transcription	Primary B cells from cord blood	blood
9	chr10:26784400-26808200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:26792400-26813400	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr10:26792800-26816600	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr10:26792800-26819200	Strong transcription	Primary T cells from cord blood	blood
13	chr10:26793200-26843200	Strong transcription	Fetal Thymus	thymus
14	chr10:26797400-26811400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr10:26799800-26813400	Strong transcription	Primary T helper cells PMA-I stimulated	--
16	chr10:26800000-26812400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr10:26800400-26804800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr10:26800400-26805400	Strong transcription	Primary T killer memory cells from peripheral blood	blood
19	chr10:26801000-26805200	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr10:26801200-26805200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
21	chr10:26801600-26813400	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr10:26801800-26819000	Strong transcription	Thymus	Thymus
23	chr10:26802200-26805600	Strong transcription	Adipose Nuclei	Adipose
24	chr10:26802200-26805800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:26802200-26806400	Weak transcription	Lung	lung
26	chr10:26802200-26807400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr10:26802200-26808000	Strong transcription	Liver	Liver
28	chr10:26802200-26808200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr10:26802200-26808200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:26802200-26808200	Weak transcription	Pancreas	Pancrea
31	chr10:26802200-26808400	Strong transcription	Primary hematopoietic stem cells	blood
32	chr10:26802200-26808800	Weak transcription	Duodenum Mucosa	Duodenum
33	chr10:26802200-26822800	Weak transcription	Spleen	Spleen
34	chr10:26802200-26839800	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr10:26802200-26853400	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr10:26802400-26818600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr10:26802400-26824800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr10:26802800-26815800	Strong transcription	GM12878-XiMat	blood
39	chr10:26803400-26808400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr10:26803800-26807400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr10:26804000-26817600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr10:26804400-26807200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr10:26804600-26805600	Weak transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links