Variant report

Variant	rs11015197
Chromosome Location	chr10:26911470-26911471
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26911042..26911570-chr17:41400814..41401666,2	NB4	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10430595	0.80[AMR][1000 genomes]
rs12251218	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7089147	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72788625	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7922616	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	esv3400546	chr10:26860715-26947192	Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3436664	chr10:26860755-26969397	Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv3409599	chr10:26860997-26947298	Weak transcription Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv894976	chr10:26861229-26925722	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv3351582	chr10:26861352-26915063	Active TSS Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv3360208	chr10:26861751-26915460	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv3221	chr10:26861964-26915516	Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1049695	chr10:26870254-26914881	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv3413883	chr10:26874259-26936074	Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	esv3444410	chr10:26874279-26936044	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv894977	chr10:26876272-26959202	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	esv3363674	chr10:26878155-26930279	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	esv3442075	chr10:26884284-26944645	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv1044848	chr10:26890410-26961634	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv1052412	chr10:26890945-26961634	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
17	nsv1041766	chr10:26890945-26969381	Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
18	nsv1037351	chr10:26894348-26936231	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
19	nsv1046911	chr10:26894348-26969381	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
20	nsv1044057	chr10:26894348-26971879	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
21	nsv516275	chr10:26896432-26968171	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
22	nsv550232	chr10:26899800-26950603	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
23	esv3333006	chr10:26908323-26985227	Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26910600-26911800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
2	chr10:26910800-26911600	Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr10:26910800-26911600	Active TSS	Pancreas	Pancrea
4	chr10:26910800-26911600	Flanking Active TSS	NHEK	skin
5	chr10:26910800-26911800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
6	chr10:26910800-26911800	Flanking Active TSS	Liver	Liver
7	chr10:26910800-26911800	Active TSS	Rectal Smooth Muscle	rectum
8	chr10:26910800-26912000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
9	chr10:26910800-26912000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
10	chr10:26910800-26912000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:26910800-26912000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:26910800-26912000	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr10:26910800-26912200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
14	chr10:26911000-26911600	Active TSS	H9 Cell Line	embryonic stem cell
15	chr10:26911000-26911600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:26911000-26911600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
17	chr10:26911000-26911600	Active TSS	Primary T cells from cord blood	blood
18	chr10:26911000-26911600	Bivalent/Poised TSS	Primary T helper 17 cells PMA-I stimulated	--
19	chr10:26911000-26911600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
20	chr10:26911000-26911600	Active TSS	Fetal Intestine Large	intestine
21	chr10:26911000-26911600	Active TSS	Fetal Intestine Small	intestine
22	chr10:26911000-26911600	Active TSS	Gastric	stomach
23	chr10:26911000-26911800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
24	chr10:26911000-26911800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr10:26911000-26911800	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:26911000-26911800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
27	chr10:26911000-26911800	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
28	chr10:26911000-26911800	Bivalent/Poised TSS	A549	lung
29	chr10:26911000-26911800	Flanking Active TSS	HMEC	breast
30	chr10:26911000-26911800	Active TSS	NH-A	brain
31	chr10:26911000-26912000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
32	chr10:26911000-26912000	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr10:26911000-26912000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
34	chr10:26911000-26912000	Flanking Active TSS	Primary hematopoietic stem cells	blood
35	chr10:26911000-26912000	Flanking Active TSS	Adipose Nuclei	Adipose
36	chr10:26911000-26912200	Enhancers	Stomach Mucosa	stomach
37	chr10:26911200-26911600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr10:26911200-26911600	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr10:26911200-26911600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr10:26911200-26911600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
41	chr10:26911200-26911600	Active TSS	Primary monocytes fromperipheralblood	blood
42	chr10:26911200-26911600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
43	chr10:26911200-26911600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr10:26911200-26911600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
45	chr10:26911200-26911600	Active TSS	Brain Germinal Matrix	brain
46	chr10:26911200-26911600	Bivalent Enhancer	Brain Hippocampus Middle	brain
47	chr10:26911200-26911600	Active TSS	Brain Inferior Temporal Lobe	brain
48	chr10:26911200-26911600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
49	chr10:26911200-26911600	Active TSS	Esophagus	oesophagus
50	chr10:26911200-26911600	Bivalent Enhancer	Fetal Brain Male	brain

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