Variant report

Variant	rs11015623
Chromosome Location	chr10:27527995-27527996
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:27441850..27444956-chr10:27527496..27532549,10	MCF-7	breast:
2	chr10:27518617..27521324-chr10:27527252..27530128,4	K562	blood:
3	chr10:27519175..27520963-chr10:27527252..27529084,2	K562	blood:
4	chr10:27441114..27446089-chr10:27527560..27532728,23	MCF-7	breast:
5	chr10:27442176..27446829-chr10:27524472..27534671,19	K562	blood:

Variant related genes	Relation type
ENSG00000251839	Chromatin interaction
ENSG00000136758	Chromatin interaction
ENSG00000120539	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11015517	1.00[AMR][1000 genomes]
rs11015528	1.00[AMR][1000 genomes]
rs11015695	1.00[AMR][1000 genomes]
rs12249954	1.00[AMR][1000 genomes]
rs12264551	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422253	chr10:27431366-27575370	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3337781	chr10:27472216-27666703	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27475600-27528600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:27476200-27528600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:27488600-27528600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:27494800-27528200	Weak transcription	K562	blood
5	chr10:27500000-27528000	Weak transcription	NHLF	lung
6	chr10:27500000-27528400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr10:27500800-27528000	Weak transcription	HMEC	breast
8	chr10:27501000-27528000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:27503200-27528200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr10:27504000-27528200	Weak transcription	Brain Substantia Nigra	brain
11	chr10:27505600-27528000	Weak transcription	NHEK	skin
12	chr10:27508400-27528400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:27508600-27529000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr10:27508800-27528000	Weak transcription	Brain Germinal Matrix	brain
15	chr10:27508800-27528600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr10:27508800-27528600	Weak transcription	Esophagus	oesophagus
17	chr10:27508800-27528600	Weak transcription	Thymus	Thymus
18	chr10:27508800-27528600	Weak transcription	HSMMtube	muscle
19	chr10:27508800-27528800	Weak transcription	Aorta	Aorta
20	chr10:27508800-27529000	Weak transcription	Small Intestine	intestine
21	chr10:27511200-27528200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:27511800-27528200	Weak transcription	Fetal Kidney	kidney
23	chr10:27512200-27528000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr10:27512200-27528200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr10:27512200-27528200	Weak transcription	Osteobl	bone
26	chr10:27512400-27528200	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr10:27512400-27528200	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr10:27516600-27528600	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr10:27517000-27528400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr10:27519800-27528600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr10:27519800-27528600	Weak transcription	Gastric	stomach
32	chr10:27520200-27528400	Weak transcription	Stomach Smooth Muscle	stomach
33	chr10:27520400-27528600	Weak transcription	Brain Cingulate Gyrus	brain
34	chr10:27520600-27528600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr10:27520600-27528600	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr10:27520800-27528000	Weak transcription	Primary B cells from peripheral blood	blood
37	chr10:27520800-27528200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr10:27520800-27528200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr10:27520800-27528400	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr10:27520800-27528600	Weak transcription	Brain Anterior Caudate	brain
41	chr10:27520800-27528600	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr10:27520800-27528600	Weak transcription	Placenta	Placenta
43	chr10:27520800-27528600	Weak transcription	HSMM	muscle
44	chr10:27521000-27528200	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr10:27521000-27528200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr10:27521000-27528200	Weak transcription	Brain Hippocampus Middle	brain
47	chr10:27521000-27528200	Weak transcription	NH-A	brain
48	chr10:27522200-27528000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr10:27522600-27528600	Weak transcription	Fetal Thymus	thymus
50	chr10:27522800-27528000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links