Variant report

Variant	rs11020142
Chromosome Location	chr11:92738569-92738570
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10830966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10830967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10830968	0.86[AFR][1000 genomes]
rs12291047	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4753429	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs956267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9971402	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044571	chr11:92495213-92742314	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv555903	chr11:92640787-92877533	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv555904	chr11:92640787-92881933	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv820151	chr11:92718283-92738795	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1048275	chr11:92719681-92795212	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92734200-92738600	Weak transcription	NHLF	lung
2	chr11:92738200-92739000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:92738200-92739200	Enhancers	HMEC	breast
4	chr11:92738200-92739400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:92738400-92738600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:92738400-92738800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:92738400-92738800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:92738400-92738800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:92738400-92738800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:92738400-92738800	Enhancers	Esophagus	oesophagus
11	chr11:92738400-92738800	Enhancers	NH-A	brain
12	chr11:92738400-92739000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr11:92738400-92739000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:92738400-92739000	Enhancers	Muscle Satellite Cultured Cells	--
15	chr11:92738400-92739000	Enhancers	Fetal Muscle Leg	muscle
16	chr11:92738400-92739000	Enhancers	HSMM	muscle
17	chr11:92738400-92739000	Enhancers	NHDF-Ad	bronchial
18	chr11:92738400-92739200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:92738400-92739200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:92738400-92739200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:92738400-92739200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr11:92738400-92739200	Enhancers	Hela-S3	cervix
23	chr11:92738400-92739200	Enhancers	HSMMtube	muscle
24	chr11:92738400-92739200	Enhancers	NHEK	skin
25	chr11:92738400-92739600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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