Variant report

Variant	rs11020149
Chromosome Location	chr11:92752644-92752645
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11020138	0.89[EUR][1000 genomes]
rs12292487	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12785983	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12788722	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2063235	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2063236	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935497	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv555903	chr11:92640787-92877533	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv555904	chr11:92640787-92881933	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1048275	chr11:92719681-92795212	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv526546	chr11:92742186-92851178	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92751200-92753400	Enhancers	NHEK	skin
2	chr11:92751200-92754800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:92751200-92754800	Enhancers	HMEC	breast
4	chr11:92751400-92753600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:92751400-92754200	Weak transcription	Aorta	Aorta
6	chr11:92751600-92753000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:92751600-92753000	Weak transcription	NH-A	brain
8	chr11:92751600-92753200	Weak transcription	HSMM	muscle
9	chr11:92751600-92753600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:92751800-92752800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:92751800-92752800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:92751800-92752800	Weak transcription	HSMMtube	muscle
13	chr11:92751800-92753000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr11:92751800-92753200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:92752000-92753200	Weak transcription	A549	lung
16	chr11:92752600-92755000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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