Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11020242	0.91[ASN][1000 genomes]
rs11020244	1.00[ASN][1000 genomes]
rs11020245	0.97[ASN][1000 genomes]
rs11020253	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11020260	0.94[ASN][1000 genomes]
rs11020262	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11020265	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11020268	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11020269	1.00[ASN][1000 genomes]
rs11020271	1.00[ASN][1000 genomes]
rs11020277	1.00[JPT][hapmap]
rs11020293	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs11020294	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs11020295	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs11020299	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11020310	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12226442	0.94[ASN][1000 genomes]
rs16918822	0.85[EUR][1000 genomes]
rs16918854	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs16918865	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs4132360	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs61413927	0.85[EUR][1000 genomes]
rs7949194	0.88[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv438	chr11:93034411-93080513	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898180	chr11:93045561-93082053	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11020261	CCDC67	cis	multi-tissue	Pritchard

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93042800-93046400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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