Variant report

Variant	rs11020409
Chromosome Location	chr11:93274154-93274155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:93239503..93241482-chr11:93273372..93276296,2	K562	blood:
2	chr11:93273632..93276207-chr11:93516954..93519497,2	K562	blood:
3	chr11:93266825..93270079-chr11:93271274..93274352,4	K562	blood:

Variant related genes	Relation type
ENSG00000042429	Chromatin interaction
ENSG00000166012	Chromatin interaction
ENSG00000234106	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12419851	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93255000-93274600	Weak transcription	Hela-S3	cervix
2	chr11:93258400-93274800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:93263200-93275200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr11:93264000-93275000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:93264000-93275000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr11:93264000-93275200	Weak transcription	HSMMtube	muscle
7	chr11:93264200-93275000	Weak transcription	Fetal Intestine Large	intestine
8	chr11:93264800-93275000	Weak transcription	Thymus	Thymus
9	chr11:93265400-93275000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:93265800-93274600	Weak transcription	Dnd41	blood
11	chr11:93266000-93274600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr11:93266000-93275000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:93268800-93275000	Weak transcription	Fetal Stomach	stomach
14	chr11:93269000-93275000	Weak transcription	NHDF-Ad	bronchial
15	chr11:93269000-93275400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr11:93269400-93274600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr11:93269800-93275000	Weak transcription	Primary T cells from cord blood	blood
18	chr11:93269800-93275800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr11:93270200-93274600	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr11:93270200-93275000	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr11:93270400-93275000	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr11:93270800-93275000	Weak transcription	Colon Smooth Muscle	Colon
23	chr11:93270800-93275600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:93271000-93274400	Enhancers	Right Atrium	heart
25	chr11:93271000-93274800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr11:93271000-93275000	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr11:93271000-93275400	Weak transcription	Brain Germinal Matrix	brain
28	chr11:93271200-93274800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr11:93271200-93275000	Weak transcription	Brain Angular Gyrus	brain
30	chr11:93271200-93275000	Weak transcription	NH-A	brain
31	chr11:93271200-93275200	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr11:93271200-93275200	Weak transcription	Brain Anterior Caudate	brain
33	chr11:93271200-93275200	Weak transcription	Brain Substantia Nigra	brain
34	chr11:93271200-93275200	Weak transcription	Fetal Brain Female	brain
35	chr11:93271200-93275200	Weak transcription	Fetal Heart	heart
36	chr11:93271200-93275400	Weak transcription	Psoas Muscle	Psoas
37	chr11:93271200-93275400	Weak transcription	HMEC	breast
38	chr11:93271400-93274200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr11:93271400-93274200	Weak transcription	K562	blood
40	chr11:93271400-93274400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr11:93271400-93274400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr11:93271400-93274600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr11:93271400-93275000	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr11:93271400-93275000	Weak transcription	NHLF	lung
45	chr11:93271400-93275000	Weak transcription	Osteobl	bone
46	chr11:93271400-93275200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr11:93271400-93275200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr11:93271400-93275200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr11:93271400-93275200	Weak transcription	Colonic Mucosa	Colon
50	chr11:93271400-93275400	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links