Variant report

Variant	rs11020540
Chromosome Location	chr11:93583368-93583369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10831107	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11020545	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs592928	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61904771	0.81[EUR][1000 genomes]
rs7117268	0.81[EUR][1000 genomes]
rs7124077	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93578400-93583800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr11:93582600-93584200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:93582600-93584200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:93582600-93584200	Enhancers	NHDF-Ad	bronchial
5	chr11:93582800-93583400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:93582800-93583400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:93582800-93583400	Flanking Active TSS	Adipose Nuclei	Adipose
8	chr11:93582800-93583400	Flanking Bivalent TSS/Enh	HepG2	liver
9	chr11:93582800-93583600	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr11:93582800-93583600	Active TSS	Pancreas	Pancrea
11	chr11:93582800-93583800	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr11:93582800-93583800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:93582800-93583800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:93582800-93583800	Enhancers	Liver	Liver
15	chr11:93582800-93583800	Active TSS	Brain Cingulate Gyrus	brain
16	chr11:93582800-93583800	Active TSS	Brain Inferior Temporal Lobe	brain
17	chr11:93582800-93584000	Active TSS	Brain Angular Gyrus	brain
18	chr11:93582800-93584000	Active TSS	Colon Smooth Muscle	Colon
19	chr11:93582800-93584000	Active TSS	Rectal Smooth Muscle	rectum
20	chr11:93582800-93584200	Enhancers	Fetal Brain Male	brain
21	chr11:93582800-93584200	Active TSS	Fetal Kidney	kidney
22	chr11:93582800-93584200	Active TSS	Fetal Lung	lung
23	chr11:93583000-93583400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:93583000-93583400	Flanking Active TSS	Primary hematopoietic stem cells	blood
25	chr11:93583000-93583400	Flanking Active TSS	Fetal Muscle Trunk	muscle
26	chr11:93583000-93583400	Flanking Active TSS	Fetal Muscle Leg	muscle
27	chr11:93583000-93583400	Active TSS	HUVEC	blood vessel
28	chr11:93583000-93583600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
29	chr11:93583000-93583600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr11:93583000-93583600	Active TSS	Breast Myoepithelial Primary Cells	Breast
31	chr11:93583000-93583600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr11:93583000-93583600	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr11:93583000-93583600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr11:93583000-93583600	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr11:93583000-93583600	Active TSS	Ovary	ovary
36	chr11:93583000-93583600	Flanking Active TSS	NHEK	skin
37	chr11:93583000-93583600	Active TSS	NHLF	lung
38	chr11:93583000-93583800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr11:93583000-93583800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:93583000-93583800	Active TSS	HUES6 Cell Line	embryonic stem cell
41	chr11:93583000-93583800	Active TSS	iPS-18 Cell Line	embryonic stem cell
42	chr11:93583000-93583800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
43	chr11:93583000-93583800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
44	chr11:93583000-93583800	Active TSS	Muscle Satellite Cultured Cells	--
45	chr11:93583000-93583800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
46	chr11:93583000-93583800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr11:93583000-93583800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr11:93583000-93583800	Active TSS	Aorta	Aorta
49	chr11:93583000-93583800	Active TSS	Brain Anterior Caudate	brain
50	chr11:93583000-93583800	Active TSS	Left Ventricle	heart

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