Variant report

Variant	rs11020599
Chromosome Location	chr11:93655204-93655205
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1032933	0.87[AMR][1000 genomes]
rs10444215	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10501812	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10831143	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11020571	0.86[AMR][1000 genomes]
rs11020574	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11020588	0.86[AMR][1000 genomes]
rs11020615	0.87[AMR][1000 genomes]
rs11511818	0.86[AMR][1000 genomes]
rs12795465	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs16919600	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61904837	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61906070	0.87[AMR][1000 genomes]
rs7940719	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv508650	chr11:93609010-93713576	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv1796911	chr11:93642877-93688134	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1049467	chr11:93651025-93778717	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93655000-93655400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:93655000-93655400	Enhancers	GM12878-XiMat	blood
3	chr11:93655000-93655600	Enhancers	NHEK	skin
4	chr11:93655000-93656400	Enhancers	HMEC	breast
5	chr11:93655200-93655400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:93655200-93655800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:93655200-93656400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:93655200-93656800	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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