Variant report

Variant	rs11020793
Chromosome Location	chr11:94201045-94201046
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94198479..94200826-chr11:94200987..94202578,2	K562	blood:
2	chr11:94200661..94202892-chr11:94224214..94225865,2	K562	blood:

Variant related genes	Relation type
ENSG00000221230	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10466370	1.00[AFR][1000 genomes]
rs12277017	0.83[AFR][1000 genomes]
rs12277098	0.90[AFR][1000 genomes]
rs12279176	1.00[AFR][1000 genomes]
rs12286651	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs12294513	1.00[ASW][hapmap];0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795745	chr11:94144987-94227993	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv1798271	chr11:94144987-94227993	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv1797582	chr11:94182992-94227993	Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
4	esv1800372	chr11:94182992-94227993	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94152200-94206200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:94157400-94216600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:94157400-94226200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:94157600-94226400	Weak transcription	Esophagus	oesophagus
5	chr11:94162800-94216400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:94162800-94225800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:94163000-94206000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:94163000-94207200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:94163400-94221000	Weak transcription	Psoas Muscle	Psoas
10	chr11:94166600-94216400	Weak transcription	Gastric	stomach
11	chr11:94166800-94202200	Weak transcription	Stomach Mucosa	stomach
12	chr11:94167200-94206000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr11:94167400-94226400	Weak transcription	Small Intestine	intestine
14	chr11:94167600-94206000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr11:94169800-94215400	Weak transcription	Brain Angular Gyrus	brain
16	chr11:94178400-94221600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:94179000-94226000	Weak transcription	Colonic Mucosa	Colon
18	chr11:94179400-94206200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr11:94180000-94217600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr11:94180600-94202800	Weak transcription	Brain Anterior Caudate	brain
21	chr11:94180600-94225800	Weak transcription	Brain Substantia Nigra	brain
22	chr11:94180800-94212600	Weak transcription	Colon Smooth Muscle	Colon
23	chr11:94180800-94215800	Weak transcription	Lung	lung
24	chr11:94181000-94226400	Weak transcription	Pancreas	Pancrea
25	chr11:94181800-94215800	Weak transcription	Fetal Intestine Small	intestine
26	chr11:94183000-94205600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:94183200-94222200	Weak transcription	HMEC	breast
28	chr11:94183600-94219800	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr11:94183600-94225800	Weak transcription	NHLF	lung
30	chr11:94184400-94225800	Weak transcription	NHDF-Ad	bronchial
31	chr11:94189600-94201400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr11:94190600-94202400	Weak transcription	Fetal Lung	lung
33	chr11:94192800-94205400	Weak transcription	HUVEC	blood vessel
34	chr11:94193400-94210800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr11:94193600-94203600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr11:94193800-94202000	Weak transcription	HepG2	liver
37	chr11:94193800-94214400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr11:94194000-94217400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:94194200-94203800	Weak transcription	A549	lung
40	chr11:94194400-94213800	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr11:94194600-94202200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr11:94194600-94202200	Weak transcription	Fetal Kidney	kidney
43	chr11:94194600-94202800	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr11:94194600-94205600	Weak transcription	NH-A	brain
45	chr11:94194600-94206000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr11:94194600-94206200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr11:94194600-94206200	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr11:94194600-94206200	Weak transcription	HSMMtube	muscle
49	chr11:94194600-94216400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr11:94194600-94221200	Weak transcription	Right Ventricle	heart

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