Variant report

Variant	rs11023935
Chromosome Location	chr11:16427252-16427253
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:14890585..14892105-chr11:16426390..16427972,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10466417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12279471	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12283348	1.00[AMR][1000 genomes]
rs12284936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12289034	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12289169	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16933000	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16933119	1.00[ASN][1000 genomes]
rs16933151	1.00[ASN][1000 genomes]
rs60685248	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv832075	chr11:16391700-16490934	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16417200-16434200	Weak transcription	Psoas Muscle	Psoas
2	chr11:16423600-16428000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:16423800-16428200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr11:16424000-16427400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:16424000-16428000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:16424200-16427400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
7	chr11:16424800-16428000	Enhancers	HepG2	liver
8	chr11:16425200-16427600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
9	chr11:16425200-16428000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
10	chr11:16425200-16428000	Weak transcription	K562	blood
11	chr11:16425800-16427600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:16426000-16427400	Enhancers	Brain Substantia Nigra	brain
13	chr11:16426200-16427400	Enhancers	Brain Germinal Matrix	brain
14	chr11:16426400-16427600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:16426800-16427400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:16426800-16427600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
17	chr11:16426800-16428200	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr11:16427000-16427400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
19	chr11:16427000-16427400	Enhancers	Brain Anterior Caudate	brain
20	chr11:16427200-16427400	Enhancers	Brain Cingulate Gyrus	brain
21	chr11:16427200-16427400	Bivalent Enhancer	Fetal Brain Male	brain
22	chr11:16427200-16429600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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