Variant report

Variant	rs11023956
Chromosome Location	chr11:16492653-16492654
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10832612	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4582933	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16461600-16510000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:16480800-16497000	Weak transcription	Left Ventricle	heart
3	chr11:16480800-16497800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr11:16491200-16494000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:16491600-16493000	Enhancers	Fetal Lung	lung
6	chr11:16491600-16493200	Enhancers	Brain Anterior Caudate	brain
7	chr11:16491800-16497000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr11:16492000-16493000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:16492000-16495600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:16492200-16496800	Weak transcription	Fetal Heart	heart
11	chr11:16492400-16495800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:16492400-16506000	Weak transcription	Psoas Muscle	Psoas
13	chr11:16492600-16493000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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