Variant report

Variant	rs11024052
Chromosome Location	chr11:16861398-16861399
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr11:16861383-16861618	MCF10A-Er-Src	breast:	n/a	n/a
2	NFIC	chr11:16861353-16861845	ECC-1	luminal epithelium:	n/a	n/a
3	FOS	chr11:16861398-16861692	MCF10A-Er-Src	breast:	n/a	n/a
4	NFIC	chr11:16861299-16861892	ECC-1	luminal epithelium:	n/a	n/a

Variant related genes	Relation type
RN7SKP90	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11024050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35098462	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4756872	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4757435	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7928012	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16813200-16871400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr11:16823000-16871400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:16836000-16861600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr11:16839200-16878800	Weak transcription	Thymus	Thymus
5	chr11:16842400-16862200	Weak transcription	Fetal Kidney	kidney
6	chr11:16842600-16873400	Weak transcription	Hela-S3	cervix
7	chr11:16842800-16862200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr11:16843000-16874600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:16844000-16862000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:16846600-16874000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr11:16847000-16864000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr11:16847000-16871200	Weak transcription	Brain Substantia Nigra	brain
13	chr11:16847200-16871400	Weak transcription	Brain Hippocampus Middle	brain
14	chr11:16847800-16865000	Weak transcription	Fetal Muscle Leg	muscle
15	chr11:16847800-16871600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr11:16848000-16862400	Weak transcription	Adipose Nuclei	Adipose
17	chr11:16848000-16863000	Weak transcription	Lung	lung
18	chr11:16848200-16861400	Weak transcription	Ovary	ovary
19	chr11:16848200-16862400	Weak transcription	Esophagus	oesophagus
20	chr11:16848200-16863000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:16848200-16871400	Weak transcription	Aorta	Aorta
22	chr11:16848200-16875200	Weak transcription	Right Ventricle	heart
23	chr11:16848400-16866600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr11:16848400-16878600	Weak transcription	Small Intestine	intestine
25	chr11:16848600-16868400	Weak transcription	HSMMtube	muscle
26	chr11:16849200-16861600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr11:16849800-16865400	Strong transcription	Fetal Intestine Small	intestine
28	chr11:16849800-16871400	Weak transcription	Pancreas	Pancrea
29	chr11:16850400-16871200	Weak transcription	Fetal Brain Female	brain
30	chr11:16850600-16865600	Weak transcription	Psoas Muscle	Psoas
31	chr11:16850600-16871800	Weak transcription	Colonic Mucosa	Colon
32	chr11:16850800-16870600	Weak transcription	Fetal Brain Male	brain
33	chr11:16853400-16883800	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr11:16854000-16868000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr11:16855000-16863400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr11:16855200-16861400	Weak transcription	Placenta	Placenta
37	chr11:16855200-16862600	Weak transcription	Left Ventricle	heart
38	chr11:16855200-16863600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:16855200-16873000	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr11:16855200-16877600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr11:16855200-16878800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr11:16855400-16861400	Weak transcription	Fetal Stomach	stomach
43	chr11:16855400-16862600	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr11:16856200-16863200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr11:16856400-16861400	Weak transcription	HepG2	liver
46	chr11:16857200-16861400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:16857600-16861400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr11:16857800-16861600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr11:16857800-16862200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr11:16857800-16862600	Weak transcription	Stomach Mucosa	stomach

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