Variant report

Variant	rs11024292
Chromosome Location	chr11:17479326-17479327
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17478295..17480154-chr11:17482165..17484728,2	K562	blood:
2	chr11:17474460..17476644-chr11:17478483..17480619,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12282638	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61019394	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv897019	chr11:17475443-17499547	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv897020	chr11:17476516-17491386	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv897021	chr11:17478157-17491386	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv897022	chr11:17478157-17496516	Enhancers Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17461200-17497400	Weak transcription	Gastric	stomach
2	chr11:17465800-17481600	Weak transcription	Fetal Brain Female	brain
3	chr11:17465800-17496400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:17470200-17482000	Weak transcription	Brain Germinal Matrix	brain
5	chr11:17472400-17489600	Weak transcription	Brain Substantia Nigra	brain
6	chr11:17474000-17482200	Weak transcription	Brain Angular Gyrus	brain
7	chr11:17474000-17485000	Weak transcription	Lung	lung
8	chr11:17474400-17481800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:17474600-17481800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr11:17474800-17481800	Weak transcription	Brain Anterior Caudate	brain
11	chr11:17474800-17481800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr11:17476400-17480600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr11:17478400-17480400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:17478600-17479800	Enhancers	Fetal Brain Male	brain
15	chr11:17478600-17480000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:17478600-17480000	Enhancers	Dnd41	blood
17	chr11:17478800-17479600	Enhancers	H9 Cell Line	embryonic stem cell
18	chr11:17478800-17479800	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr11:17478800-17480000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr11:17478800-17480200	Enhancers	H1 Cell Line	embryonic stem cell
21	chr11:17478800-17480200	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr11:17478800-17480200	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr11:17478800-17480200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:17478800-17480400	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr11:17479000-17479600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr11:17479000-17479600	Enhancers	Fetal Thymus	thymus
27	chr11:17479000-17479800	Enhancers	Fetal Muscle Leg	muscle
28	chr11:17479000-17480000	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr11:17479000-17480200	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr11:17479000-17480200	Enhancers	Primary hematopoietic stem cells	blood
31	chr11:17479000-17480200	Enhancers	Fetal Muscle Trunk	muscle
32	chr11:17479000-17481400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr11:17479200-17479600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr11:17479200-17479600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:17479200-17479800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
36	chr11:17479200-17479800	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr11:17479200-17480200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr11:17479200-17482200	Enhancers	Adipose Nuclei	Adipose

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