Variant report
| Variant | rs1102446 |
|---|---|
| Chromosome Location | chr1:77450255-77450256 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs1021809 | 0.88[ASN][1000 genomes] |
| rs1021810 | 0.88[ASN][1000 genomes] |
| rs1102443 | 1.00[ASN][1000 genomes] |
| rs1102450 | 0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1102452 | 0.93[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12725479 | 0.88[ASN][1000 genomes] |
| rs12738622 | 0.88[ASN][1000 genomes] |
| rs12739214 | 0.88[ASN][1000 genomes] |
| rs12739665 | 1.00[ASN][1000 genomes] |
| rs12758534 | 1.00[ASN][1000 genomes] |
| rs1933396 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1933397 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs199676 | 0.88[ASN][1000 genomes] |
| rs199682 | 0.88[ASN][1000 genomes] |
| rs199685 | 0.86[ASN][1000 genomes] |
| rs199686 | 0.86[ASN][1000 genomes] |
| rs199687 | 0.88[ASN][1000 genomes] |
| rs2003707 | 1.00[ASN][1000 genomes] |
| rs34099189 | 1.00[ASN][1000 genomes] |
| rs34192006 | 1.00[ASN][1000 genomes] |
| rs34760364 | 1.00[ASN][1000 genomes] |
| rs34981569 | 1.00[ASN][1000 genomes] |
| rs35800181 | 1.00[ASN][1000 genomes] |
| rs35804226 | 0.88[ASN][1000 genomes] |
| rs4949764 | 1.00[ASN][1000 genomes] |
| rs6603930 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6658692 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6669856 | 0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6669868 | 0.83[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6683527 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67296422 | 1.00[ASN][1000 genomes] |
| rs742681 | 1.00[ASN][1000 genomes] |
| rs7540333 | 0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1003826 | chr1:76965331-77656929 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv535006 | chr1:76965331-77656929 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv830292 | chr1:77425571-77584307 | Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:77444400-77452600 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
| 2 | chr1:77448200-77454800 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
